C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin, light polypeptide (Lca)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107845 Clta-004 ENSMUSG00000028478 10090 + 4:44012686-44032846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000107845
Transcript ID Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000107845 17.556±0.00 18.314±2.12 11.757±0.16 3.528±0.62 100.345±42.12 47.240±1.10 3.241±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0002 CGP 4:43983483-44032846
CIL_0006K3 CIL_0006K3_0002 CGP 4:44004452-44084177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242285 CLTA-001 protein_coding Homo_sapiens 0 645
ENST00000345519 CLTA-002 protein_coding Homo_sapiens 0 1275
ENST00000396603 CLTA-004 protein_coding Homo_sapiens 0 643
ENST00000433436 CLTA-201 protein_coding Homo_sapiens 0 645
ENST00000464497 CLTA-008 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000466396 CLTA-005 protein_coding Homo_sapiens 0 292
ENST00000470744 CLTA-003 protein_coding Homo_sapiens 0 645
ENST00000493185 CLTA-007 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000538225 CLTA-202 protein_coding Homo_sapiens 0 645
ENST00000540080 CLTA-203 protein_coding Homo_sapiens 0 806
ENST00000544818 RP11-444J21.2-001 processed_pseudogene Homo_sapiens 0 512

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