C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin, light polypeptide (Lca)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170241 Clta-201 ENSMUSG00000028478 10090 + 4:44012643-44032845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170241 97.689±13.58 119.187±11.54 148.410±7.73 42.565±9.22 90.543±44.12 147.114±17.57 20.855±2.89 128.394±10.53 115.055±49.09 105.253±8.47 10.599±2.01 130.533±33.12 232.698±63.09 16.175±1.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0002 CGP 4:43983483-44032846
CIL_0006K3 CIL_0006K3_0002 CGP 4:44004452-44084177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242285 CLTA-001 protein_coding Homo_sapiens 0 688
ENST00000345519 CLTA-002 protein_coding Homo_sapiens 0 1323
ENST00000396603 CLTA-004 protein_coding Homo_sapiens 0 682
ENST00000433436 CLTA-201 protein_coding Homo_sapiens 0 701
ENST00000464497 CLTA-008 nonsense_mediated_decay Homo_sapiens 0 684
ENST00000466396 CLTA-005 protein_coding Homo_sapiens 0 309
ENST00000470744 CLTA-003 protein_coding Homo_sapiens 0 680
ENST00000493185 CLTA-007 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000538225 CLTA-202 protein_coding Homo_sapiens 0 688
ENST00000540080 CLTA-203 protein_coding Homo_sapiens 0 806
ENST00000544818 RP11-444J21.2-001 processed_pseudogene Homo_sapiens 0 490

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