C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006K3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122705-ENSG00000122705 CGP 9606 9:36190856-36304781
GeneTranscriptPositionBiotype
ENSG00000122705 (CLTA)
clathrin, light chain A 		ENST00000242285 (CLTA-001) 36190937-36212059 protein_coding
ENST00000345519 (CLTA-002) 36190923-36212056 protein_coding
ENST00000396603 (CLTA-004) 36190963-36212059 protein_coding
ENST00000433436 (CLTA-201) 36190856-36212061 protein_coding
ENST00000464497 (CLTA-008) 36190931-36304781 nonsense_mediated_decay
ENST00000466396 (CLTA-005) 36190963-36211784 protein_coding
ENST00000470744 (CLTA-003) 36190932-36212058 protein_coding
ENST00000493185 (CLTA-007) 36191165-36212057 nonsense_mediated_decay
ENST00000538225 (CLTA-202) 36190856-36212061 protein_coding
ENST00000540080 (CLTA-203) 36190856-36212061 protein_coding
ENSG00000159921 (GNE)
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 		ENST00000377902 (GNE-001) 36217190-36258499 protein_coding
ENST00000396594 (GNE-003) 36214441-36277056 protein_coding
ENST00000447283 (GNE-005) 36217189-36258329 protein_coding
ENST00000539208 (GNE-002) 36217152-36258445 protein_coding
ENST00000539815 (GNE-201) 36214444-36249396 protein_coding
ENST00000543356 (GNE-004) 36216943-36277042 protein_coding
ENSG00000215283 (HMGB3P24)
high mobility group box 3 pseudogene 24 		ENST00000433260 (HMGB3P24-001) 36303499-36304924 processed_pseudogene
ENSG00000222760 (RNU4-53P)
RNA, U4 small nuclear 53, pseudogene 		ENST00000410828 (RNU4-53P-201) 36267783-36267922 snRNA
CIL_0006K3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028478-ENSMUSG00000028479 CGP 10090 4:44004452-44084177
GeneTranscriptPositionBiotype
ENSMUSG00000028478 (Clta)
clathrin, light polypeptide (Lca) 		ENSMUST00000107845 (Clta-004) 44012686-44032846 protein_coding
ENSMUST00000107846 (Clta-001) 44004452-44032846 protein_coding
ENSMUST00000107847 (Clta-005) 44012638-44032846 protein_coding
ENSMUST00000107849 (Clta-002) 44012678-44032846 protein_coding
ENSMUST00000107851 (Clta-003) 44012678-44032846 protein_coding
ENSMUST00000170241 (Clta-201) 44012643-44032845 protein_coding
ENSMUSG00000028479 (Gne)
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 		ENSMUST00000030201 (Gne-001) 44034075-44084177 protein_coding
ENSMUST00000102936 (Gne-002) 44036826-44072778 protein_coding
ENSMUST00000128439 (Gne-004) 44060103-44073017 protein_coding
ENSMUST00000133709 (Gne-006) 44045955-44072624 nonsense_mediated_decay
ENSMUST00000140724 (Gne-005) 44060112-44073018 protein_coding
ENSMUST00000144985 (Gne-003) 44059868-44083923 protein_coding
ENSMUST00000172514 (Gne-014) 44059700-44084167 retained_intron
ENSMUST00000172533 (Gne-008) 44036830-44066920 nonsense_mediated_decay
ENSMUST00000173234 (Gne-009) 44036958-44066960 protein_coding
ENSMUST00000173274 (Gne-011) 44052875-44067061 protein_coding
ENSMUST00000173383 (Gne-010) 44059991-44072602 protein_coding
ENSMUST00000173569 (Gne-012) 44059972-44072736 processed_transcript
ENSMUST00000173976 (Gne-013) 44055305-44063173 retained_intron
ENSMUST00000174522 (Gne-007) 44036810-44055297 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006K3_0001ENSG00000122705ENST00000242285ENST00000345519ENST00000396603ENST00000433436ENST00000464497ENST00000466396ENST00000470744ENST00000493185ENST00000538225ENST00000540080ENSG00000159921ENST00000377902ENST00000396594ENST00000447283ENST00000539208ENST00000539815ENST00000543356ENSG00000215283ENST00000433260ENSG00000222760ENST00000410828CIL_0006K3_0002ENSMUSG00000028478ENSMUST00000107845ENSMUST00000107846ENSMUST00000107847ENSMUST00000107849ENSMUST00000107851ENSMUST00000170241ENSMUSG00000028479ENSMUST00000030201ENSMUST00000102936ENSMUST00000128439ENSMUST00000133709ENSMUST00000140724ENSMUST00000144985ENSMUST00000172514ENSMUST00000172533ENSMUST00000173234ENSMUST00000173274ENSMUST00000173383ENSMUST00000173569ENSMUST00000173976ENSMUST00000174522
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006K3_0001ENSG00000122705ENST00000242285ENST00000345519ENST00000396603ENST00000466396ENST00000470744ENST00000493185ENST00000538225ENST00000540080ENSG00000159921ENST00000377902ENST00000396594ENST00000539208ENST00000539815ENST00000543356ENSG00000215283ENST00000433260ENSG00000222760ENST00000410828CIL_0006K3_0002ENSMUSG00000028478ENSMUST00000107845ENSMUST00000107847ENSMUST00000107849ENSMUST00000107851ENSMUST00000170241ENSMUSG00000028479ENSMUST00000030201ENSMUST00000102936ENSMUST00000140724ENSMUST00000172533ENSMUST00000173234ENSMUST00000173274ENSMUST00000173569ENSMUST00000174522
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122705 ENST00000242285 N/A N/A N/A 7.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000345519 82.256±0.00 90.324±0.00 7.000±0.00 27.007±17.00 53.721±32.62 58.590±43.02 13.241±9.65 64.618±47.19 26.702±16.35 45.082±34.69 9.142±6.38 144.392±80.09 271.296±71.58 107.765±11.66
ENST00000396603 N/A N/A N/A 22.296±11.57 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466396 N/A N/A N/A 83.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470744 N/A N/A N/A 4.904±0.00 N/A N/A N/A N/A N/A N/A 9.085±0.00 N/A N/A N/A
ENST00000493185 N/A 17.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.473±0.00
ENST00000538225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.590±0.00 N/A N/A N/A
ENST00000540080 N/A N/A N/A N/A N/A N/A N/A N/A 11.363±0.00 N/A N/A N/A N/A N/A
ENSG00000159921 ENST00000377902 N/A N/A N/A N/A N/A 3.228±0.00 0.229±0.00 7.295±0.00 N/A N/A N/A 5.415±0.00 N/A N/A
ENST00000396594 N/A 2.633±0.00 1.093±0.00 N/A 4.761±2.78 5.301±1.28 N/A 9.808±2.70 10.742±10.08 1.518±0.00 1.390±0.96 7.106±1.29 3.733±1.71 N/A
ENST00000447283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539208 3.144±0.00 2.723±0.00 N/A N/A 2.481±0.00 N/A 1.190±0.00 N/A N/A N/A 1.458±0.03 N/A N/A N/A
ENST00000539815 N/A N/A 0.272±0.00 1.209±0.22 N/A 1.576±0.00 N/A 4.251±0.00 N/A N/A N/A 2.748±0.00 N/A N/A
ENST00000543356 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.253±0.00 N/A N/A N/A N/A
ENSG00000215283 ENST00000433260 0.224±0.00 0.981±0.00 N/A 0.331±0.22 0.410±0.28 0.066±0.00 0.022±0.00 0.120±0.00 0.134±0.00 0.145±0.00 0.215±0.00 0.289±0.16 0.114±0.07 0.626±0.16
ENSG00000222760 ENST00000410828 N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028478 ENSMUST00000107845 N/A N/A N/A N/A 17.556±0.00 N/A N/A 18.314±2.12 11.757±0.16 N/A 3.528±0.62 100.345±42.12 47.240±1.10 3.241±0.00
ENSMUST00000107846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107847 N/A N/A N/A N/A N/A N/A 13.104±2.64 N/A N/A N/A 12.688±0.68 N/A N/A N/A
ENSMUST00000107849 N/A N/A N/A 90.607±23.93 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107851 N/A N/A N/A 64.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170241 97.689±13.58 119.187±11.54 148.410±7.73 42.565±9.22 90.543±44.12 147.114±17.57 20.855±2.89 128.394±10.53 115.055±49.09 105.253±8.47 10.599±2.01 130.533±33.12 232.698±63.09 16.175±1.97
ENSMUSG00000028479 ENSMUST00000030201 2.762±0.00 1.077±0.20 2.234±0.26 3.019±0.92 1.705±0.23 31.394±5.20 N/A 1.531±0.46 2.060±0.79 2.665±0.18 0.405±0.00 1.863±0.40 2.336±0.75 0.157±0.00
ENSMUST00000102936 3.538±0.35 2.032±0.40 2.861±0.41 3.993±3.09 2.245±0.79 13.917±0.00 0.680±0.00 2.620±0.39 5.064±1.06 4.408±0.28 0.838±0.23 3.437±1.40 9.133±5.05 0.378±0.20
ENSMUST00000128439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.889±0.00 N/A
ENSMUST00000144985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172533 N/A N/A N/A N/A 2.917±0.00 29.450±5.08 0.740±0.00 N/A 5.018±1.69 N/A N/A 1.808±0.08 3.118±0.00 0.229±0.00
ENSMUST00000173234 3.510±1.44 2.711±0.33 N/A N/A 3.326±0.28 58.275±12.11 1.444±0.34 3.250±0.59 10.842±2.10 4.992±0.38 0.421±0.00 4.220±1.08 2.060±0.00 0.291±0.02
ENSMUST00000173274 N/A N/A N/A N/A 3.280±0.00 N/A 2.513±0.28 N/A 6.003±2.24 N/A 0.944±0.00 5.852±0.52 12.053±3.89 0.834±0.00
ENSMUST00000173383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173569 N/A 5.202±1.90 N/A N/A 3.034±0.00 N/A N/A N/A N/A N/A N/A 4.658±1.31 N/A N/A
ENSMUST00000173976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174522 N/A 2.723±0.00 N/A N/A N/A 27.817±3.80 N/A 2.524±0.00 6.854±1.19 N/A 0.676±0.15 3.599±1.38 14.142±3.58 0.392±0.00

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