C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028495 Rps6 10090 - 4:86854660-86857412 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102814 Rps6-001 86854660-86857412 protein_coding
  ENSMUST00000123229 Rps6-004 86855752-86857354 processed_transcript
  ENSMUST00000130001 Rps6-003 86855862-86857332 processed_transcript
  ENSMUST00000136174 Rps6-002 86854804-86857345 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102814ENSMUST00000123229ENSMUST00000136174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102814 70.169±2.55 10.666±0.76 752.410±186.64 200.060±61.47 83.928±33.12 75.975±19.03 62.140±14.77 64.947±17.01 224.706±210.14 50.626±12.16 131.974±13.09 175.450±183.15 355.963±153.90 73.128±2.68
ENSMUST00000123229 50.248±3.15 111.993±3.92 N/A 105.123±39.53 156.072±11.59 242.583±55.88 50.595±21.38 106.320±4.09 110.505±16.81 161.072±0.00 N/A 166.148±55.06 50.026±0.00 50.934±9.06
ENSMUST00000136174 N/A 4.716±1.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DD CIL_0007DD_0002 CGP 4:86748555-86857412
CIL_0007DC CIL_0007DC_0002 CGP 4:86854660-86934822

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IEA ribosomal small subunit assembly
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0001890 IMP placenta development
GO:0002309 IGI T cell proliferation involved in immune response
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IDA ribosome
GO:0005844 IDA polysome
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006924 IMP activation-induced cell death of T cells
GO:0007067 IMP mitotic nuclear division
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0007369 IGI gastrulation
GO:0015935 IEA small ribosomal subunit
GO:0016020 IEA membrane
GO:0019901 IEA protein kinase binding
GO:0022605 IMP oogenesis stage
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030425 IEA dendrite
GO:0030529 ISO ribonucleoprotein complex
GO:0031929 IEA TOR signaling
GO:0033077 IGI T cell differentiation in thymus
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0042593 IDA glucose homeostasis
GO:0043065 IEA positive regulation of apoptotic process
GO:0043066 IMP negative regulation of apoptotic process
GO:0044297 IEA cell body
GO:0044822 IEA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048821 IMP erythrocyte development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019778 rps6 ribosomal protein S6 protein_coding Danio_rerio
ENSG00000137154 RPS6 ribosomal protein S6 protein_coding Homo_sapiens

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