C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137154 RPS6 9606 - 9:19375715-19380254 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315377 RPS6-003 19376285-19380198 protein_coding
  ENST00000380381 RPS6-004 19378774-19380236 protein_coding
  ENST00000380384 RPS6-002 19376270-19380206 protein_coding
  ENST00000380394 RPS6-001 19375715-19380254 protein_coding
  ENST00000498815 RPS6-005 19376255-19376839 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315377ENST00000380394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315377 868.903±0.00 1410.870±0.00 113.081±0.00 265.103±154.64 549.248±175.65 1076.847±599.39 204.096±139.27 530.906±327.16 425.641±58.27 887.213±701.28 302.244±180.31 1379.625±775.84 848.281±130.39 663.163±292.85
ENST00000380394 98.090±0.00 161.409±0.00 10.162±0.00 16.792±0.00 52.412±12.77 114.795±0.00 10.490±0.00 20.944±0.00 38.119±0.00 36.756±0.00 31.856±0.00 233.986±178.35 N/A 80.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DD CIL_0007DD_0001 CGP 9:19230435-19380254
CIL_0007DC CIL_0007DC_0001 CGP 9:19375715-19452020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IEA ribosomal small subunit assembly
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001890 IEA placenta development
GO:0002309 IEA T cell proliferation involved in immune response
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005844 IEA polysome
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006924 IEA activation-induced cell death of T cells
GO:0007067 IEA mitotic nuclear division
GO:0007093 IEA mitotic cell cycle checkpoint
GO:0007369 IEA gastrulation
GO:0008286 TAS insulin receptor signaling pathway
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019901 IPI protein kinase binding
GO:0022605 IEA oogenesis stage
GO:0022627 NAS cytosolic small ribosomal subunit
GO:0030425 IDA dendrite
GO:0030529 IDA ribonucleoprotein complex
GO:0031929 IDA TOR signaling
GO:0033077 IEA T cell differentiation in thymus
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0042593 ISS glucose homeostasis
GO:0043065 IDA positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0044267 TAS cellular protein metabolic process
GO:0044297 IDA cell body
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048821 IEA erythrocyte development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019778 rps6 ribosomal protein S6 protein_coding Danio_rerio
ENSMUSG00000028495 Rps6 ribosomal protein S6 protein_coding Mus_musculus

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