C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102814 Rps6-001 ENSMUSG00000028495 10090 - 4:86854660-86857412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102814 70.169±2.55 10.666±0.76 752.410±186.64 200.060±61.47 83.928±33.12 75.975±19.03 62.140±14.77 64.947±17.01 224.706±210.14 50.626±12.16 131.974±13.09 175.450±183.15 355.963±153.90 73.128±2.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DD CIL_0007DD_0002 CGP 4:86748555-86857412
CIL_0007DC CIL_0007DC_0002 CGP 4:86854660-86934822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IEA ribosomal small subunit assembly
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0001890 IMP placenta development
GO:0002309 IGI T cell proliferation involved in immune response
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IDA ribosome
GO:0005844 IDA polysome
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006924 IMP activation-induced cell death of T cells
GO:0007067 IMP mitotic nuclear division
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0007369 IGI gastrulation
GO:0015935 IEA small ribosomal subunit
GO:0016020 IEA membrane
GO:0019901 IEA protein kinase binding
GO:0022605 IMP oogenesis stage
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030425 IEA dendrite
GO:0030529 ISO ribonucleoprotein complex
GO:0031929 IEA TOR signaling
GO:0033077 IGI T cell differentiation in thymus
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0042593 IDA glucose homeostasis
GO:0043065 IEA positive regulation of apoptotic process
GO:0043066 IMP negative regulation of apoptotic process
GO:0044297 IEA cell body
GO:0044822 IEA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048821 IMP erythrocyte development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315377 RPS6-003 protein_coding Homo_sapiens 0 870
ENST00000366455 AC007618.3-001 processed_pseudogene Homo_sapiens 0 350
ENST00000380381 RPS6-004 protein_coding Homo_sapiens 8.99634e-43 178
ENST00000380384 RPS6-002 protein_coding Homo_sapiens 0 883
ENST00000380394 RPS6-001 protein_coding Homo_sapiens 0 944
ENST00000393214 AC004386.4-001 processed_pseudogene Homo_sapiens 0 544
ENST00000397390 RP11-146N23.1-001 processed_pseudogene Homo_sapiens 0 416
ENST00000463969 RP11-864G5.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000464444 AD000092.3-001 processed_pseudogene Homo_sapiens 0 688
ENST00000475592 RP11-392P7.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000479691 RPS6P16-001 processed_pseudogene Homo_sapiens 0 510
ENST00000498815 RPS6-005 processed_transcript Homo_sapiens 0 331

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