C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007DD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137145-ENSG00000137154 CGP 9606 9:19230435-19380254
GeneTranscriptPositionBiotype
ENSG00000137145 (DENND4C)
DENN/MADD domain containing 4C 		ENST00000361024 (DENND4C-003) 19346556-19373545 protein_coding
ENST00000380424 (DENND4C-004) 19346728-19357695 protein_coding
ENST00000380427 (DENND4C-002) 19342669-19372880 protein_coding
ENST00000380437 (DENND4C-008) 19290758-19372594 retained_intron
ENST00000434457 (DENND4C-006) 19230435-19372598 protein_coding
ENST00000494124 (DENND4C-009) 19290758-19372594 nonsense_mediated_decay
ENST00000602442 (DENND4C-010) 19336404-19341044 retained_intron
ENST00000602708 (DENND4C-007) 19230797-19276671 retained_intron
ENST00000602925 (DENND4C-005) 19230435-19372858 protein_coding
ENSG00000137154 (RPS6)
ribosomal protein S6 		ENST00000315377 (RPS6-003) 19376285-19380198 protein_coding
ENST00000380381 (RPS6-004) 19378774-19380236 protein_coding
ENST00000380384 (RPS6-002) 19376270-19380206 protein_coding
ENST00000380394 (RPS6-001) 19375715-19380254 protein_coding
ENST00000498815 (RPS6-005) 19376255-19376839 processed_transcript
ENSG00000232978 (RP11-146N23.4)
 ENST00000417577 (RP11-146N23.4-001) 19291337-19292576 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007DD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038024-ENSMUSG00000028495 CGP 10090 4:86748555-86857412
GeneTranscriptPositionBiotype
ENSMUSG00000028495 (Rps6)
ribosomal protein S6 		ENSMUST00000102814 (Rps6-001) 86854660-86857412 protein_coding
ENSMUST00000123229 (Rps6-004) 86855752-86857354 processed_transcript
ENSMUST00000130001 (Rps6-003) 86855862-86857332 processed_transcript
ENSMUST00000136174 (Rps6-002) 86854804-86857345 processed_transcript
ENSMUSG00000038024 (Dennd4c)
DENN/MADD domain containing 4C 		ENSMUST00000045512 (Dennd4c-201) 86748555-86830167 protein_coding
ENSMUST00000082026 (Dennd4c-001) 86748555-86850603 protein_coding
ENSMUST00000128710 (Dennd4c-002) 86777843-86781752 processed_transcript
ENSMUST00000142837 (Dennd4c-003) 86774255-86849055 protein_coding
ENSMUSG00000082969 (Gm12630)
predicted gene 12630 		ENSMUST00000121575 (Gm12630-001) 86817794-86818577 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DD_0001ENSG00000137145ENST00000361024ENST00000380424ENST00000380427ENST00000380437ENST00000434457ENST00000494124ENST00000602442ENST00000602708ENST00000602925ENSG00000137154ENST00000315377ENST00000380381ENST00000380384ENST00000380394ENST00000498815ENSG00000232978ENST00000417577CIL_0007DD_0002ENSMUSG00000028495ENSMUST00000102814ENSMUST00000123229ENSMUST00000130001ENSMUST00000136174ENSMUSG00000038024ENSMUST00000045512ENSMUST00000082026ENSMUST00000128710ENSMUST00000142837ENSMUSG00000082969ENSMUST00000121575
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DD_0001ENSG00000137145ENST00000361024ENST00000380427ENST00000380437ENST00000434457ENST00000494124ENST00000602925ENSG00000137154ENST00000315377ENST00000380394ENSG00000232978ENST00000417577CIL_0007DD_0002ENSMUSG00000028495ENSMUST00000102814ENSMUST00000123229ENSMUST00000136174ENSMUSG00000038024ENSMUST00000045512ENSMUST00000082026ENSMUST00000142837ENSMUSG00000082969ENSMUST00000121575
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137145 ENST00000361024 N/A 3.174±0.00 N/A N/A 1.415±0.00 2.462±0.00 1.809±0.00 1.289±0.00 N/A 2.817±0.00 0.886±0.00 5.663±0.66 2.391±1.52 3.393±0.81
ENST00000380424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380427 2.431±0.00 N/A N/A N/A 2.531±0.00 N/A N/A 1.789±0.00 1.105±0.00 N/A N/A 2.095±0.00 1.552±0.00 N/A
ENST00000380437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.115±0.00
ENST00000434457 N/A 1.761±0.00 2.028±0.00 N/A 7.285±0.00 7.302±0.00 0.422±0.00 0.822±0.00 3.016±0.00 N/A N/A 2.736±2.16 3.135±0.00 1.236±0.00
ENST00000494124 N/A N/A N/A N/A N/A N/A N/A 1.619±0.00 N/A N/A N/A 2.835±0.00 N/A N/A
ENST00000602442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602925 N/A N/A N/A N/A N/A N/A 0.887±0.00 N/A 4.099±0.00 N/A 1.183±0.00 1.463±0.51 2.209±0.00 1.501±0.43
ENSG00000137154 ENST00000315377 868.903±0.00 1410.870±0.00 113.081±0.00 265.103±154.64 549.248±175.65 1076.847±599.39 204.096±139.27 530.906±327.16 425.641±58.27 887.213±701.28 302.244±180.31 1379.625±775.84 848.281±130.39 663.163±292.85
ENST00000380381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380394 98.090±0.00 161.409±0.00 10.162±0.00 16.792±0.00 52.412±12.77 114.795±0.00 10.490±0.00 20.944±0.00 38.119±0.00 36.756±0.00 31.856±0.00 233.986±178.35 N/A 80.297±0.00
ENST00000498815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232978 ENST00000417577 0.218±0.00 N/A N/A 0.102±0.00 0.820±0.58 0.604±0.54 0.048±0.00 0.116±0.00 0.890±0.00 4.526±0.00 N/A 2.046±2.33 0.569±0.00 0.378±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028495 ENSMUST00000102814 70.169±2.55 10.666±0.76 752.410±186.64 200.060±61.47 83.928±33.12 75.975±19.03 62.140±14.77 64.947±17.01 224.706±210.14 50.626±12.16 131.974±13.09 175.450±183.15 355.963±153.90 73.128±2.68
ENSMUST00000123229 50.248±3.15 111.993±3.92 N/A 105.123±39.53 156.072±11.59 242.583±55.88 50.595±21.38 106.320±4.09 110.505±16.81 161.072±0.00 N/A 166.148±55.06 50.026±0.00 50.934±9.06
ENSMUST00000130001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136174 N/A 4.716±1.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038024 ENSMUST00000045512 N/A 1.572±0.26 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.740±0.65 N/A N/A
ENSMUST00000082026 7.213±3.59 3.991±0.69 6.925±0.07 2.272±0.83 5.021±0.52 8.432±0.29 2.562±0.75 3.217±0.31 2.494±0.52 6.206±0.76 1.800±0.57 6.106±2.29 5.161±3.33 2.999±0.46
ENSMUST00000128710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142837 1.004±0.10 N/A N/A 1.289±0.00 0.986±0.00 N/A 0.764±0.11 0.549±0.01 0.600±0.13 N/A N/A 5.683±0.00 1.608±0.73 2.897±0.00
ENSMUSG00000082969 ENSMUST00000121575 0.598±0.20 0.271±0.07 0.192±0.11 0.445±0.14 0.421±0.18 0.406±0.10 0.249±0.04 0.443±0.20 0.137±0.09 0.363±0.25 N/A 0.539±0.16 0.158±0.06 0.237±0.04

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