C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028542 Slc6a9 10090 + 4:117834506-117875198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030269 Slc6a9-001 117835051-117869305 protein_coding
  ENSMUST00000063857 Slc6a9-003 117834506-117869296 protein_coding
  ENSMUST00000123994 Slc6a9-011 117855492-117857427 protein_coding
  ENSMUST00000132043 Slc6a9-006 117849193-117864004 protein_coding
  ENSMUST00000135769 Slc6a9-007 117855544-117856027 processed_transcript
  ENSMUST00000136476 Slc6a9-008 117835438-117857171 processed_transcript
  ENSMUST00000149168 Slc6a9-002 117835333-117875196 nonsense_mediated_decay
  ENSMUST00000151316 Slc6a9-004 117834995-117843109 protein_coding
  ENSMUST00000163288 Slc6a9-010 117849370-117868425 protein_coding
  ENSMUST00000169885 Slc6a9-009 117835397-117868337 protein_coding
  ENSMUST00000169990 Slc6a9-013 117849199-117864004 protein_coding
  ENSMUST00000170733 Slc6a9-012 117874082-117875198 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030269ENSMUST00000123994ENSMUST00000132043ENSMUST00000149168ENSMUST00000163288ENSMUST00000169885ENSMUST00000170733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030269 N/A N/A N/A N/A N/A N/A N/A N/A 7.807±0.00 N/A N/A N/A N/A N/A
ENSMUST00000123994 N/A N/A N/A N/A N/A N/A N/A N/A 27.039±2.31 N/A N/A N/A N/A N/A
ENSMUST00000132043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.721±0.00 N/A N/A N/A
ENSMUST00000149168 N/A N/A 6.419±0.00 N/A N/A N/A N/A N/A 7.142±3.12 N/A N/A N/A N/A N/A
ENSMUST00000163288 6.335±4.08 N/A 7.142±0.00 N/A 3.077±0.37 7.868±0.25 N/A 2.524±0.33 15.262±11.09 13.048±0.07 N/A 23.044±2.68 2.496±0.00 N/A
ENSMUST00000169885 2.930±0.00 7.589±0.12 5.786±0.00 6.105±0.00 1.628±0.00 7.081±0.35 1.140±0.00 2.777±0.37 9.214±0.86 N/A 1.466±0.56 10.232±6.00 1.491±0.85 N/A
ENSMUST00000170733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.137±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_0001PP CIL_0001PP_0002 CGP 4:117834506-117875198

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005515 IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015187 IDA glycine transmembrane transporter activity
GO:0015816 IDA glycine transport
GO:0016021 IC integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018534 slc6a9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein_coding Danio_rerio
ENSG00000196517 SLC6A9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein_coding Homo_sapiens

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