C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196517 SLC6A9 9606 - 1:43991500-44031467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357730 SLC6A9-002 43997528-44017325 protein_coding
  ENST00000360584 SLC6A9-001 43997528-44017325 protein_coding
  ENST00000372306 SLC6A9-009 43991831-44031360 protein_coding
  ENST00000372307 SLC6A9-008 43991500-44016556 protein_coding
  ENST00000372310 SLC6A9-003 43996483-44031386 protein_coding
  ENST00000466926 SLC6A9-007 44010726-44031462 protein_coding
  ENST00000475075 SLC6A9-005 43997443-44031386 protein_coding
  ENST00000489764 SLC6A9-006 44010192-44031429 retained_intron
  ENST00000492434 SLC6A9-004 44008515-44031467 processed_transcript
  ENST00000528803 SLC6A9-011 44008597-44017332 protein_coding
  ENST00000533007 SLC6A9-010 44014630-44017340 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357730ENST00000372306ENST00000372307ENST00000372310ENST00000475075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357730 N/A N/A 0.242±0.00 8.718±0.00 N/A N/A N/A N/A N/A 0.764±0.00 N/A N/A N/A N/A
ENST00000372306 N/A N/A N/A N/A 1.110±0.00 1.121±0.00 N/A N/A 0.456±0.00 N/A N/A 1.290±0.00 N/A N/A
ENST00000372307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.974±0.00 2.763±0.00
ENST00000372310 2.036±0.00 6.160±0.00 0.443±0.00 4.617±3.98 2.279±0.00 5.061±0.00 0.228±0.14 1.334±1.17 0.089±0.00 8.815±8.44 0.348±0.00 8.676±5.69 1.462±0.25 2.616±0.00
ENST00000475075 N/A N/A 0.564±0.00 1.006±0.00 N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0015187 IEA glycine transmembrane transporter activity
GO:0015375 TAS glycine:sodium symporter activity
GO:0015816 IEA glycine transport
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018534 slc6a9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein_coding Danio_rerio
ENSMUSG00000028542 Slc6a9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein_coding Mus_musculus

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