C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | solute carrier family 6 (neurotransmitter transporter, glycine), member 9 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000063857  |
Slc6a9-003 |
ENSMUSG00000028542 |
10090 | + |
4:117834506-117869296  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008SF | CIL_0008SF_0002 | VISTA | 4:117346906-117947610 |
| CIL_0009B8 | CIL_0009B8_0002 | VISTA | 4:117528714-118131599 |
| CIL_0001PP | CIL_0001PP_0002 | CGP | 4:117834506-117875198 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003333 | IEA | amino acid transmembrane transport |
| GO:0005283 | IEA | sodium:amino acid symporter activity |
| GO:0005328 | IEA | neurotransmitter:sodium symporter activity |
| GO:0005886 | IDA | plasma membrane |
| GO:0005887 | IEA | integral component of plasma membrane |
| GO:0006836 | IEA | neurotransmitter transport |
| GO:0015187 | IDA | glycine transmembrane transporter activity |
| GO:0015816 | IDA | glycine transport |
| GO:0016021 | IC | integral component of membrane |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000357730
|
SLC6A9-002 | protein_coding | Homo_sapiens | 0 | 2499 |
|
ENST00000360584
|
SLC6A9-001 | protein_coding | Homo_sapiens | 0 | 2499 |
|
ENST00000372306
|
SLC6A9-009 | protein_coding | Homo_sapiens | 0 | 2021 |
|
ENST00000372307
|
SLC6A9-008 | protein_coding | Homo_sapiens | 0 | 2034 |
|
ENST00000372310
|
SLC6A9-003 | protein_coding | Homo_sapiens | 0 | 2660 |
|
ENST00000466926
|
SLC6A9-007 | protein_coding | Homo_sapiens | 0 | 276 |
|
ENST00000475075
|
SLC6A9-005 | protein_coding | Homo_sapiens | 0 | 2047 |
|
ENST00000489764
|
SLC6A9-006 | retained_intron | Homo_sapiens | 0 | 381 |
|
ENST00000492434
|
SLC6A9-004 | processed_transcript | Homo_sapiens | 0 | 387 |
|
ENST00000528803
|
SLC6A9-011 | protein_coding | Homo_sapiens | 0 | 525 |
