C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169885 Slc6a9-009 ENSMUSG00000028542 10090 + 4:117835397-117868337 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000169885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000169885 2.930±0.00 7.589±0.12 5.786±0.00 6.105±0.00 1.628±0.00 7.081±0.35 1.140±0.00 2.777±0.37 9.214±0.86 1.466±0.56 10.232±6.00 1.491±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_0001PP CIL_0001PP_0002 CGP 4:117834506-117875198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015187 IDA glycine transmembrane transporter activity
GO:0015816 IDA glycine transport
GO:0016021 IC integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357730 SLC6A9-002 protein_coding Homo_sapiens 0 2021
ENST00000360584 SLC6A9-001 protein_coding Homo_sapiens 0 2021
ENST00000372306 SLC6A9-009 protein_coding Homo_sapiens 0 1439
ENST00000372307 SLC6A9-008 protein_coding Homo_sapiens 0 1555
ENST00000372310 SLC6A9-003 protein_coding Homo_sapiens 0 2047
ENST00000466926 SLC6A9-007 protein_coding Homo_sapiens 0 244
ENST00000475075 SLC6A9-005 protein_coding Homo_sapiens 0 2287
ENST00000489764 SLC6A9-006 retained_intron Homo_sapiens 0 243
ENST00000492434 SLC6A9-004 processed_transcript Homo_sapiens 0 243

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