C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163288 Slc6a9-010 ENSMUSG00000028542 10090 + 4:117849370-117868425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000163288
Transcript ID Adipose Bladder Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000163288 6.335±4.08 7.142±0.00 3.077±0.37 7.868±0.25 2.524±0.33 15.262±11.09 13.048±0.07 23.044±2.68 2.496±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_0001PP CIL_0001PP_0002 CGP 4:117834506-117875198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015187 IDA glycine transmembrane transporter activity
GO:0015816 IDA glycine transport
GO:0016021 IC integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357730 SLC6A9-002 protein_coding Homo_sapiens 0 2226
ENST00000360584 SLC6A9-001 protein_coding Homo_sapiens 0 2226
ENST00000372306 SLC6A9-009 protein_coding Homo_sapiens 0 1644
ENST00000372307 SLC6A9-008 protein_coding Homo_sapiens 0 1760
ENST00000372310 SLC6A9-003 protein_coding Homo_sapiens 0 2283
ENST00000466926 SLC6A9-007 protein_coding Homo_sapiens 0 204
ENST00000475075 SLC6A9-005 protein_coding Homo_sapiens 0 2047
ENST00000489764 SLC6A9-006 retained_intron Homo_sapiens 0 200
ENST00000492434 SLC6A9-004 processed_transcript Homo_sapiens 0 387
ENST00000528803 SLC6A9-011 protein_coding Homo_sapiens 0 303

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