C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor I/A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028565 Nfia 10090 + 4:97772734-98118874 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052018 Nfia-004 97777819-98118871 protein_coding
  ENSMUST00000075448 Nfia-001 97777608-98118871 protein_coding
  ENSMUST00000092532 Nfia-201 97777626-98118874 protein_coding
  ENSMUST00000107057 Nfia-002 97777834-98118871 protein_coding
  ENSMUST00000107062 Nfia-003 97777803-98118871 protein_coding
  ENSMUST00000133011 Nfia-006 97911033-98042595 processed_transcript
  ENSMUST00000148930 Nfia-007 97880119-98065355 protein_coding
  ENSMUST00000152023 Nfia-005 97772734-98000466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052018ENSMUST00000075448ENSMUST00000092532ENSMUST00000107057ENSMUST00000107062ENSMUST00000148930ENSMUST00000152023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052018 2.826±0.00 5.789±2.33 N/A 0.574±0.00 N/A N/A N/A N/A 1.863±1.24 N/A 0.506±0.30 4.417±1.35 0.116±0.07 N/A
ENSMUST00000075448 6.633±0.98 9.152±3.26 4.953±0.89 10.463±0.22 7.367±1.39 4.063±0.67 4.546±0.86 5.563±0.37 3.019±2.16 6.899±1.00 0.794±0.33 6.601±2.86 0.619±0.52 0.811±0.39
ENSMUST00000092532 2.219±0.00 N/A N/A 1.600±0.00 1.874±0.36 0.776±0.00 1.140±0.23 N/A 0.740±0.51 1.250±0.00 0.254±0.00 1.818±0.62 0.255±0.00 0.191±0.01
ENSMUST00000107057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.07 0.743±0.00 N/A N/A
ENSMUST00000107062 2.271±0.30 2.936±0.21 2.080±0.52 N/A 2.087±0.86 1.279±0.22 1.700±0.40 1.274±0.40 0.800±0.56 2.271±0.32 0.634±0.28 3.407±0.93 0.177±0.00 0.225±0.04
ENSMUST00000148930 26.915±4.53 20.759±2.94 N/A N/A 25.736±4.32 10.645±2.05 18.349±1.70 13.720±3.82 7.453±4.44 18.518±1.43 N/A 30.983±11.73 N/A 2.508±0.55
ENSMUST00000152023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.531±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OH CIL_0007OH_0002 UCNEbase 4:96979874-98319114
CIL_0001NA CIL_0001NA_0002 CGP 4:97772734-98383306

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0014070 IEA response to organic cyclic compound
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062420 nfia nuclear factor I/A protein_coding Danio_rerio
ENSG00000162599 NFIA nuclear factor I/A protein_coding Homo_sapiens

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