C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075448 Nfia-001 ENSMUSG00000028565 10090 + 4:97777608-98118871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075448 6.633±0.98 9.152±3.26 4.953±0.89 10.463±0.22 7.367±1.39 4.063±0.67 4.546±0.86 5.563±0.37 3.019±2.16 6.899±1.00 0.794±0.33 6.601±2.86 0.619±0.52 0.811±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OH CIL_0007OH_0002 UCNEbase 4:96979874-98319114
CIL_0001NA CIL_0001NA_0002 CGP 4:97772734-98383306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0014070 IEA response to organic cyclic compound
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063467 nfia-201 protein_coding Danio_rerio 2e-19 104
ENST00000341919 NFIC-004 protein_coding Homo_sapiens 0 357
ENST00000357977 NFIA-008 protein_coding Homo_sapiens 0 2154
ENST00000371184 NFIA-006 protein_coding Homo_sapiens 0 1133
ENST00000371185 NFIA-005 protein_coding Homo_sapiens 0 1683
ENST00000371187 NFIA-003 protein_coding Homo_sapiens 0 2235
ENST00000371189 NFIA-015 protein_coding Homo_sapiens 0 2641
ENST00000371191 NFIA-002 protein_coding Homo_sapiens 0 2564
ENST00000395111 NFIC-003 protein_coding Homo_sapiens 0 329
ENST00000403491 NFIA-001 protein_coding Homo_sapiens 0 3306
ENST00000407417 NFIA-014 protein_coding Homo_sapiens 0 2566
ENST00000443272 NFIC-006 protein_coding Homo_sapiens 0 357
ENST00000476646 NFIA-013 protein_coding Homo_sapiens 0 1002
ENST00000479364 NFIA-009 processed_transcript Homo_sapiens 0 1308
ENST00000482020 NFIA-010 protein_coding Homo_sapiens 0 577
ENST00000485903 NFIA-007 protein_coding Homo_sapiens 0 1496
ENST00000493627 NFIA-011 protein_coding Homo_sapiens 0 331
ENST00000496712 NFIA-012 protein_coding Homo_sapiens 0 409
ENST00000586919 NFIC-011 protein_coding Homo_sapiens 0 329
ENST00000589123 NFIC-001 protein_coding Homo_sapiens 0 329
ENST00000590282 NFIC-005 protein_coding Homo_sapiens 0 357

Loading