C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor I/A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162599 NFIA 9606 + 1:60865259-61462793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357977 NFIA-008 61404076-61458037 protein_coding
  ENST00000371184 NFIA-006 61082754-61455487 protein_coding
  ENST00000371185 NFIA-005 61082748-61455526 protein_coding
  ENST00000371187 NFIA-003 61082621-61456394 protein_coding
  ENST00000371189 NFIA-015 61081862-61455562 protein_coding
  ENST00000371191 NFIA-002 60865259-61455525 protein_coding
  ENST00000403491 NFIA-001 61082308-61462793 protein_coding
  ENST00000407417 NFIA-014 61077274-61455585 protein_coding
  ENST00000476646 NFIA-013 61053830-61332586 protein_coding
  ENST00000479364 NFIA-009 61081767-61406727 processed_transcript
  ENST00000482020 NFIA-010 61352450-61404226 protein_coding
  ENST00000485903 NFIA-007 61082723-61455524 protein_coding
  ENST00000493627 NFIA-011 61406672-61455874 protein_coding
  ENST00000496712 NFIA-012 61088412-61133028 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357977ENST00000371187ENST00000403491ENST00000485903ENST00000493627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357977 N/A N/A 2.025±0.00 1.524±0.00 4.721±0.00 N/A 2.837±0.00 4.346±0.00 6.737±0.00 2.995±0.00 N/A 2.469±0.00 N/A N/A
ENST00000371187 N/A N/A N/A N/A N/A 5.243±0.00 2.274±0.00 8.734±0.00 9.227±0.00 4.245±0.00 N/A N/A N/A N/A
ENST00000403491 6.647±0.00 5.506±0.00 1.804±0.00 4.603±3.33 4.968±0.50 6.136±0.36 6.285±3.10 5.983±2.42 8.302±4.80 3.051±1.18 2.247±1.18 5.790±4.25 0.705±0.42 4.453±2.64
ENST00000485903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.105±0.00 N/A N/A N/A
ENST00000493627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.272±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OH CIL_0007OH_0001 UCNEbase 1:60234802-61638594
CIL_0007QX CIL_0007QX_0001 VISTA 1:60321185-60922199
CIL_0001NA CIL_0001NA_0001 CGP 1:60865259-61725423

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0014070 IEA response to organic cyclic compound
GO:0019079 NAS viral genome replication
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062420 nfia nuclear factor I/A protein_coding Danio_rerio
ENSMUSG00000028565 Nfia nuclear factor I/A protein_coding Mus_musculus

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