C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152023 Nfia-005 ENSMUSG00000028565 10090 + 4:97772734-98000466 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000152023
Transcript ID Placenta
ENSMUST00000152023 0.531±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OH CIL_0007OH_0002 UCNEbase 4:96979874-98319114
CIL_0001NA CIL_0001NA_0002 CGP 4:97772734-98383306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341919 NFIC-004 protein_coding Homo_sapiens 0 329
ENST00000371184 NFIA-006 protein_coding Homo_sapiens 0 769
ENST00000371185 NFIA-005 protein_coding Homo_sapiens 0 769
ENST00000371187 NFIA-003 protein_coding Homo_sapiens 0 1003
ENST00000371189 NFIA-015 protein_coding Homo_sapiens 0 1003
ENST00000371191 NFIA-002 protein_coding Homo_sapiens 0 1007
ENST00000395111 NFIC-003 protein_coding Homo_sapiens 0 333
ENST00000403491 NFIA-001 protein_coding Homo_sapiens 0 1003
ENST00000407417 NFIA-014 protein_coding Homo_sapiens 0 1254
ENST00000443272 NFIC-006 protein_coding Homo_sapiens 0 329
ENST00000476646 NFIA-013 protein_coding Homo_sapiens 0 1002
ENST00000479364 NFIA-009 processed_transcript Homo_sapiens 0 239
ENST00000485903 NFIA-007 protein_coding Homo_sapiens 0 1003
ENST00000496712 NFIA-012 protein_coding Homo_sapiens 0 409
ENST00000586919 NFIC-011 protein_coding Homo_sapiens 0 333
ENST00000589123 NFIC-001 protein_coding Homo_sapiens 0 333
ENST00000590282 NFIC-005 protein_coding Homo_sapiens 0 329

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