C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | serine/arginine repetitive matrix 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000136409  |
Srrm1-006 |
ENSMUSG00000028809 |
10090 | - |
4:135344528-135347204  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007ZX | CIL_0007ZX_0002 | VISTA | 4:134905845-135507207 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000375 | ISO | RNA splicing, via transesterification reactions |
| GO:0000398 | ISO | mRNA splicing, via spliceosome |
| GO:0005681 | IDA | spliceosomal complex |
| GO:0016363 | ISO | nuclear matrix |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000323848
|
SRRM1-001 | protein_coding | Homo_sapiens | 0 | 335 |
|
ENST00000374389
|
SRRM1-002 | protein_coding | Homo_sapiens | 0 | 335 |
|
ENST00000426911
|
SRRM1P3-001 | processed_pseudogene | Homo_sapiens | 0 | 300 |
|
ENST00000447431
|
SRRM1-201 | protein_coding | Homo_sapiens | 0 | 335 |
|
ENST00000462710
|
SRRM1-004 | retained_intron | Homo_sapiens | 0 | 427 |
|
ENST00000466910
|
SRRM1-007 | processed_transcript | Homo_sapiens | 0 | 333 |
|
ENST00000468822
|
SRRM1-009 | processed_transcript | Homo_sapiens | 0 | 335 |
|
ENST00000478890
|
SRRM1-006 | processed_transcript | Homo_sapiens | 0 | 335 |
|
ENST00000479034
|
SRRM1-003 | processed_transcript | Homo_sapiens | 0 | 335 |
|
ENST00000490543
|
SRRM1-012 | processed_transcript | Homo_sapiens | 0 | 333 |
|
ENST00000494934
|
SRRM1-010 | retained_intron | Homo_sapiens | 0 | 193 |
|
ENST00000495561
|
SRRM1-013 | processed_transcript | Homo_sapiens | 0 | 193 |
|
ENST00000593639
|
SRRM1-024 | protein_coding | Homo_sapiens | 0 | 335 |
|
ENST00000596378
|
SRRM1-022 | protein_coding | Homo_sapiens | 0 | 335 |
|
ENST00000600523
|
SRRM1-023 | nonsense_mediated_decay | Homo_sapiens | 0 | 333 |
