C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105861 Srrm1-003 ENSMUSG00000028809 10090 - 4:135320484-135353321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105861
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105861 5.326±1.59 4.023±0.94 14.973±0.66 8.877±1.33 4.047±1.75 5.137±1.15 3.547±0.91 4.113±1.15 8.935±8.42 6.266±0.87 6.807±0.87 7.710±6.52 15.604±4.02 5.827±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0002 VISTA 4:134905845-135507207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 ISO RNA splicing, via transesterification reactions
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0005681 IDA spliceosomal complex
GO:0016363 ISO nuclear matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323848 SRRM1-001 protein_coding Homo_sapiens 0 3755
ENST00000374389 SRRM1-002 protein_coding Homo_sapiens 0 2052
ENST00000426911 SRRM1P3-001 processed_pseudogene Homo_sapiens 0 2462
ENST00000447431 SRRM1-201 protein_coding Homo_sapiens 0 3542
ENST00000461768 SRRM1-017 processed_transcript Homo_sapiens 0 531
ENST00000462710 SRRM1-004 retained_intron Homo_sapiens 0 429
ENST00000466910 SRRM1-007 processed_transcript Homo_sapiens 0 457
ENST00000468822 SRRM1-009 processed_transcript Homo_sapiens 0 822
ENST00000470243 SRRM1-014 processed_transcript Homo_sapiens 0 366
ENST00000478890 SRRM1-006 processed_transcript Homo_sapiens 0 619
ENST00000479034 SRRM1-003 processed_transcript Homo_sapiens 0 2117
ENST00000485441 SRRM1-011 processed_transcript Homo_sapiens 0 444
ENST00000485541 SRRM1-015 processed_transcript Homo_sapiens 0 540
ENST00000488317 SRRM1-020 retained_intron Homo_sapiens 0 215
ENST00000490543 SRRM1-012 processed_transcript Homo_sapiens 0 407
ENST00000494934 SRRM1-010 retained_intron Homo_sapiens 0 375
ENST00000495561 SRRM1-013 processed_transcript Homo_sapiens 0 375
ENST00000496882 SRRM1-016 processed_transcript Homo_sapiens 0 994
ENST00000593639 SRRM1-024 protein_coding Homo_sapiens 0 571
ENST00000596378 SRRM1-022 protein_coding Homo_sapiens 0 2015
ENST00000600523 SRRM1-023 nonsense_mediated_decay Homo_sapiens 0 433

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