| Transcript ID | Adrenal | Colon | Lung | Ovary |
|---|---|---|---|---|
| ENSMUST00000136342 | 1.209±0.00 | 2.767±0.45 | 1.341±0.00 | 1.985±0.38 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | serine/arginine repetitive matrix 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000136342  |
Srrm1-015 |
ENSMUSG00000028809 |
10090 | - |
4:135321094-135353244  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007ZX | CIL_0007ZX_0002 | VISTA | 4:134905845-135507207 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000375 | ISO | RNA splicing, via transesterification reactions |
| GO:0000398 | ISO | mRNA splicing, via spliceosome |
| GO:0003677 | IEA | DNA binding |
| GO:0005634 | IEA | nucleus |
| GO:0005681 | IDA | spliceosomal complex |
| GO:0016363 | ISO | nuclear matrix |
| GO:0044822 | IEA | poly(A) RNA binding |
| GO:0071013 | IEA | catalytic step 2 spliceosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000323848
|
SRRM1-001 | protein_coding | Homo_sapiens | 0 | 2239 |
|
ENST00000374389
|
SRRM1-002 | protein_coding | Homo_sapiens | 0 | 3528 |
|
ENST00000426911
|
SRRM1P3-001 | processed_pseudogene | Homo_sapiens | 0 | 1676 |
|
ENST00000447431
|
SRRM1-201 | protein_coding | Homo_sapiens | 0 | 2071 |
|
ENST00000461768
|
SRRM1-017 | processed_transcript | Homo_sapiens | 0 | 627 |
|
ENST00000462710
|
SRRM1-004 | retained_intron | Homo_sapiens | 0 | 429 |
|
ENST00000466910
|
SRRM1-007 | processed_transcript | Homo_sapiens | 0 | 457 |
|
ENST00000468822
|
SRRM1-009 | processed_transcript | Homo_sapiens | 0 | 822 |
|
ENST00000470243
|
SRRM1-014 | processed_transcript | Homo_sapiens | 0 | 366 |
|
ENST00000478890
|
SRRM1-006 | processed_transcript | Homo_sapiens | 0 | 619 |
|
ENST00000479034
|
SRRM1-003 | processed_transcript | Homo_sapiens | 0 | 3193 |
|
ENST00000485441
|
SRRM1-011 | processed_transcript | Homo_sapiens | 0 | 444 |
|
ENST00000485541
|
SRRM1-015 | processed_transcript | Homo_sapiens | 0 | 542 |
|
ENST00000488317
|
SRRM1-020 | retained_intron | Homo_sapiens | 0 | 215 |
|
ENST00000490543
|
SRRM1-012 | processed_transcript | Homo_sapiens | 0 | 407 |
|
ENST00000494934
|
SRRM1-010 | retained_intron | Homo_sapiens | 0 | 375 |
|
ENST00000495561
|
SRRM1-013 | processed_transcript | Homo_sapiens | 0 | 375 |
|
ENST00000496882
|
SRRM1-016 | processed_transcript | Homo_sapiens | 0 | 994 |
|
ENST00000593639
|
SRRM1-024 | protein_coding | Homo_sapiens | 0 | 571 |
|
ENST00000596378
|
SRRM1-022 | protein_coding | Homo_sapiens | 0 | 2567 |
|
ENST00000600523
|
SRRM1-023 | nonsense_mediated_decay | Homo_sapiens | 0 | 433 |
