C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitination factor E4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028960 Ube4b 10090 - 4:149328416-149426749 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084123 Ube4b-003 149365401-149426631 retained_intron
  ENSMUST00000103212 Ube4b-001 149328416-149426749 protein_coding
  ENSMUST00000131986 Ube4b-004 149398512-149399378 processed_transcript
  ENSMUST00000136732 Ube4b-008 149350729-149351706 retained_intron
  ENSMUST00000138027 Ube4b-005 149387081-149387662 processed_transcript
  ENSMUST00000138181 Ube4b-002 149328422-149335114 nonsense_mediated_decay
  ENSMUST00000153430 Ube4b-006 149335202-149336108 processed_transcript
  ENSMUST00000155968 Ube4b-007 149329499-149331832 processed_transcript
  ENSMUST00000172643 Ube4b-010 149385126-149426600 processed_transcript
  ENSMUST00000172836 Ube4b-012 149329676-149425905 nonsense_mediated_decay
  ENSMUST00000173005 Ube4b-009 149398500-149426216 retained_intron
  ENSMUST00000174343 Ube4b-011 149329676-149425905 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084123ENSMUST00000103212ENSMUST00000138181ENSMUST00000155968ENSMUST00000172836ENSMUST00000174343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084123 5.677±0.00 9.711±1.12 N/A N/A 5.255±0.60 4.635±0.33 N/A 2.930±0.00 1.895±0.23 3.900±0.47 N/A 7.916±1.44 N/A N/A
ENSMUST00000103212 7.952±2.06 2.764±0.42 7.935±0.95 16.534±5.12 4.036±1.72 3.212±0.26 2.929±1.44 6.855±0.70 4.100±1.18 5.883±1.57 1.956±0.37 5.494±2.24 11.992±3.29 3.174±0.38
ENSMUST00000138181 15.982±1.04 13.806±3.84 12.966±1.50 32.075±11.80 14.094±2.62 14.552±2.16 8.325±1.00 13.549±2.13 7.561±1.40 10.801±1.42 N/A 22.700±14.10 34.898±25.37 11.630±0.00
ENSMUST00000155968 N/A 15.397±1.98 N/A N/A N/A 7.813±0.00 N/A N/A N/A N/A N/A 14.496±0.20 N/A N/A
ENSMUST00000172836 N/A 3.713±0.00 N/A N/A 4.058±0.85 N/A N/A N/A N/A N/A N/A 4.312±0.00 5.359±2.16 N/A
ENSMUST00000174343 N/A 4.164±0.65 N/A 13.576±0.00 N/A N/A N/A N/A N/A N/A N/A 8.477±2.90 17.246±4.79 1.539±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133
CIL_0006QX CIL_0006QX_0002 CGP 4:149176319-149426749

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA:TAS ubiquitin ligase complex
GO:0005737 IDA cytoplasm
GO:0006457 NAS protein folding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008626 ISS granzyme-mediated apoptotic signaling pathway
GO:0009411 ISS response to UV
GO:0016567 IEA protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0042787 TAS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037017 ube4b ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000130939 UBE4B ubiquitination factor E4B protein_coding Homo_sapiens

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