C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitination factor E4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138181 Ube4b-002 ENSMUSG00000028960 10090 - 4:149328422-149335114 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000138181
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000138181 15.982±1.04 13.806±3.84 12.966±1.50 32.075±11.80 14.094±2.62 14.552±2.16 8.325±1.00 13.549±2.13 7.561±1.40 10.801±1.42 22.700±14.10 34.898±25.37 11.630±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133
CIL_0006QX CIL_0006QX_0002 CGP 4:149176319-149426749

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0016567 IEA protein ubiquitination
GO:0034450 IEA ubiquitin-ubiquitin ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253251 UBE4B-002 protein_coding Homo_sapiens 0 462
ENST00000343090 UBE4B-001 protein_coding Homo_sapiens 0 462
ENST00000487244 UBE4B-004 retained_intron Homo_sapiens 0 457

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