C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006QX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037020-ENSDARG00000037017 CGP 7955 23:29639078-29796583
GeneTranscriptPositionBiotype
ENSDARG00000037017 (ube4b)
ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) 		ENSDART00000053804 (ube4b-001) 29750207-29796583 protein_coding
ENSDART00000064236 (ube4b-201) 29751061-29796520 protein_coding
ENSDART00000121475 (ube4b-202) 29751061-29796520 protein_coding
ENSDART00000122920 (ube4b-203) 29751061-29796520 protein_coding
ENSDART00000126384 (ube4b-204) 29751106-29796322 protein_coding
ENSDARG00000037020 (kif1b)
kinesin family member 1B 		ENSDART00000050915 (kif1b-201) 29641872-29748355 protein_coding
ENSDART00000053807 (kif1b-202) 29682699-29745179 protein_coding
ENSDART00000141075 (kif1b-002) 29639078-29745179 protein_coding
ENSDART00000146458 (kif1b-001) 29682699-29748537 protein_coding
ENSDARG00000085192 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000120592 (5S_rRNA.1057-201) 29673333-29673447 rRNA
CIL_0006QX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063077-ENSMUSG00000028960 CGP 10090 4:149176319-149426749
GeneTranscriptPositionBiotype
ENSMUSG00000028960 (Ube4b)
ubiquitination factor E4B 		ENSMUST00000084123 (Ube4b-003) 149365401-149426631 retained_intron
ENSMUST00000103212 (Ube4b-001) 149328416-149426749 protein_coding
ENSMUST00000131986 (Ube4b-004) 149398512-149399378 processed_transcript
ENSMUST00000136732 (Ube4b-008) 149350729-149351706 retained_intron
ENSMUST00000138027 (Ube4b-005) 149387081-149387662 processed_transcript
ENSMUST00000138181 (Ube4b-002) 149328422-149335114 nonsense_mediated_decay
ENSMUST00000153430 (Ube4b-006) 149335202-149336108 processed_transcript
ENSMUST00000155968 (Ube4b-007) 149329499-149331832 processed_transcript
ENSMUST00000172643 (Ube4b-010) 149385126-149426600 processed_transcript
ENSMUST00000172836 (Ube4b-012) 149329676-149425905 nonsense_mediated_decay
ENSMUST00000173005 (Ube4b-009) 149398500-149426216 retained_intron
ENSMUST00000174343 (Ube4b-011) 149329676-149425905 nonsense_mediated_decay
ENSMUSG00000063077 (Kif1b)
kinesin family member 1B 		ENSMUST00000030806 (Kif1b-007) 149233734-149307623 protein_coding
ENSMUST00000055647 (Kif1b-003) 149180236-149307506 protein_coding
ENSMUST00000060537 (Kif1b-001) 149176319-149307692 protein_coding
ENSMUST00000123593 (Kif1b-009) 149206730-149213791 retained_intron
ENSMUST00000132072 (Kif1b-005) 149291126-149307664 retained_intron
ENSMUST00000133526 (Kif1b-008) 149214972-149223518 retained_intron
ENSMUST00000139123 (Kif1b-011) 149178863-149198494 protein_coding
ENSMUST00000140749 (Kif1b-006) 149245356-149247979 retained_intron
ENSMUST00000150230 (Kif1b-002) 149264470-149307693 retained_intron
ENSMUST00000150853 (Kif1b-004) 149178018-149186200 retained_intron
ENSMUST00000154411 (Kif1b-010) 149206331-149210099 retained_intron
ENSMUSG00000085286 (Ube4bos3)
ubiquitination factor E4B, opposite strand 3 		ENSMUST00000155845 (Ube4bos3-001) 149334639-149335897 antisense
ENSMUSG00000085807 (Ube4bos2)
ubiquitination factor E4B, opposite strand 2 		ENSMUST00000154000 (Ube4bos2-001) 149338087-149338531 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QX_0001ENSDARG00000037017ENSDART00000053804ENSDART00000064236ENSDART00000121475ENSDART00000122920ENSDART00000126384ENSDARG00000037020ENSDART00000050915ENSDART00000053807ENSDART00000141075ENSDART00000146458ENSDARG00000085192ENSDART00000120592CIL_0006QX_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006QX_0001ENSDARG00000037017ENSDART00000053804ENSDART00000121475ENSDART00000122920ENSDART00000126384ENSDARG00000037020ENSDART00000050915ENSDART00000053807ENSDART00000141075ENSDART00000146458ENSDARG00000085192ENSDART00000120592CIL_0006QX_0002ENSMUSG00000028960ENSMUST00000084123ENSMUST00000103212ENSMUST00000138181ENSMUST00000155968ENSMUST00000172836ENSMUST00000174343ENSMUSG00000063077ENSMUST00000030806ENSMUST00000055647ENSMUST00000060537ENSMUST00000139123ENSMUST00000150230ENSMUSG00000085286ENSMUST00000155845ENSMUSG00000085807ENSMUST00000154000
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000037017 ENSDART00000053804 N/A N/A N/A 6.150±4.67 N/A N/A 2.470±1.08 14.260±11.62 0.466±0.00 N/A 3.472±0.00 N/A N/A N/A
ENSDART00000064236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000121475 N/A N/A N/A N/A N/A N/A N/A N/A 1.462±0.00 N/A N/A N/A N/A N/A
ENSDART00000122920 N/A N/A N/A 1.872±0.00 N/A N/A 2.074±0.00 6.545±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000126384 N/A N/A N/A N/A N/A N/A 1.764±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000037020 ENSDART00000050915 N/A N/A N/A N/A N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A
ENSDART00000053807 N/A N/A N/A N/A N/A N/A 2.223±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141075 N/A N/A N/A 77.240±61.50 N/A N/A 1.603±0.62 2.773±0.37 0.189±0.00 N/A 2.095±0.00 N/A N/A N/A
ENSDART00000146458 N/A N/A N/A N/A N/A N/A N/A 0.814±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000085192 ENSDART00000120592 N/A N/A N/A 89.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028960 ENSMUST00000084123 5.677±0.00 9.711±1.12 N/A N/A 5.255±0.60 4.635±0.33 N/A 2.930±0.00 1.895±0.23 3.900±0.47 N/A 7.916±1.44 N/A N/A
ENSMUST00000103212 7.952±2.06 2.764±0.42 7.935±0.95 16.534±5.12 4.036±1.72 3.212±0.26 2.929±1.44 6.855±0.70 4.100±1.18 5.883±1.57 1.956±0.37 5.494±2.24 11.992±3.29 3.174±0.38
ENSMUST00000131986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138181 15.982±1.04 13.806±3.84 12.966±1.50 32.075±11.80 14.094±2.62 14.552±2.16 8.325±1.00 13.549±2.13 7.561±1.40 10.801±1.42 N/A 22.700±14.10 34.898±25.37 11.630±0.00
ENSMUST00000153430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155968 N/A 15.397±1.98 N/A N/A N/A 7.813±0.00 N/A N/A N/A N/A N/A 14.496±0.20 N/A N/A
ENSMUST00000172643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172836 N/A 3.713±0.00 N/A N/A 4.058±0.85 N/A N/A N/A N/A N/A N/A 4.312±0.00 5.359±2.16 N/A
ENSMUST00000173005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174343 N/A 4.164±0.65 N/A 13.576±0.00 N/A N/A N/A N/A N/A N/A N/A 8.477±2.90 17.246±4.79 1.539±0.00
ENSMUSG00000063077 ENSMUST00000030806 N/A N/A 3.865±0.10 N/A 9.027±0.00 N/A 3.535±0.41 N/A 1.093±0.15 4.708±0.00 23.491±8.44 6.268±0.91 3.066±0.73 N/A
ENSMUST00000055647 N/A N/A N/A 38.214±0.00 9.302±2.26 N/A N/A N/A N/A N/A N/A 6.552±0.52 2.671±0.81 5.579±1.07
ENSMUST00000060537 9.728±0.90 7.726±2.58 2.845±0.00 37.581±7.54 5.056±0.18 N/A 3.328±0.33 N/A 5.494±0.45 9.287±0.00 13.024±1.12 N/A N/A 0.986±0.00
ENSMUST00000123593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139123 N/A 15.603±1.46 N/A 40.953±0.00 8.256±1.42 5.344±0.51 4.729±0.00 N/A 5.139±2.39 N/A N/A 8.308±1.06 N/A 3.156±0.00
ENSMUST00000140749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150230 N/A 34.608±13.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.611±0.00 N/A N/A
ENSMUST00000150853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085286 ENSMUST00000155845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.592±6.42
ENSMUSG00000085807 ENSMUST00000154000 0.399±0.08 0.705±0.00 0.181±0.00 0.205±0.15 1.214±0.90 0.442±0.17 N/A 0.438±0.24 0.327±0.14 0.673±0.28 N/A 1.240±0.41 0.211±0.06 6.054±1.84

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