C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD50 interactor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124680 Rint1-003 ENSMUSG00000028999 10090 + 5:23787719-23820368 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000124680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000124680 0.923±0.00 0.921±0.06 1.412±0.24 1.382±0.01 1.299±0.33 1.127±0.18 2.668±0.88 0.402±0.15 1.955±0.77 1.574±0.01 0.534±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040X CIL_00040X_0002 CGP 5:23740648-23820369

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257700 RINT1-001 protein_coding Homo_sapiens 0 1382
ENST00000467392 RINT1-002 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000474123 RINT1-007 retained_intron Homo_sapiens 0 556
ENST00000482041 RINT1-004 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000485614 EFCAB10-004 protein_coding Homo_sapiens 5e-25 119
ENST00000493041 RINT1-003 protein_coding Homo_sapiens 0 337
ENST00000497979 RINT1-008 nonsense_mediated_decay Homo_sapiens 0 1382

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