C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD50 interactor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115113 Rint1-002 ENSMUSG00000028999 10090 + 5:23787715-23820297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainOvaryPlacentaTestisENSMUST00000115113
Transcript ID Adrenal Brain Ovary Placenta Testis
ENSMUST00000115113 1.363±0.00 4.746±0.00 2.589±0.00 7.925±1.41 1.241±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040X CIL_00040X_0002 CGP 5:23740648-23820369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 ISS endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:1902504 ISS regulation of signal transduction involved in mitotic G2 DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257700 RINT1-001 protein_coding Homo_sapiens 0 1812
ENST00000474123 RINT1-007 retained_intron Homo_sapiens 0 699
ENST00000482041 RINT1-004 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000485614 EFCAB10-004 protein_coding Homo_sapiens 5e-25 119
ENST00000493041 RINT1-003 protein_coding Homo_sapiens 0 327
ENST00000497979 RINT1-008 nonsense_mediated_decay Homo_sapiens 0 1812

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