C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD50 interactor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030852 Rint1-001 ENSMUSG00000028999 10090 + 5:23787711-23820369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030852 3.346±0.52 2.268±0.86 2.939±0.25 3.050±1.64 2.297±0.61 2.821±1.42 1.829±0.12 2.924±0.33 4.522±2.10 3.041±0.14 1.203±0.38 3.129±0.89 5.696±0.82 1.525±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040X CIL_00040X_0002 CGP 5:23740648-23820369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:1902504 ISS regulation of signal transduction involved in mitotic G2 DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257700 RINT1-001 protein_coding Homo_sapiens 0 2418
ENST00000467392 RINT1-002 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000474123 RINT1-007 retained_intron Homo_sapiens 0 699
ENST00000482041 RINT1-004 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000485614 EFCAB10-004 protein_coding Homo_sapiens 5e-25 119
ENST00000493041 RINT1-003 protein_coding Homo_sapiens 0 337
ENST00000497979 RINT1-008 nonsense_mediated_decay Homo_sapiens 0 2137

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