C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 26, member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029015 Slc26a5 10090 - 5:21810655-21865604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030878 Slc26a5-001 21810655-21865604 protein_coding
  ENSMUST00000115176 Slc26a5-002 21810655-21861998 protein_coding
  ENSMUST00000127975 Slc26a5-004 21811149-21847332 protein_coding
  ENSMUST00000142888 Slc26a5-003 21811018-21847380 nonsense_mediated_decay
  ENSMUST00000150012 Slc26a5-005 21815750-21820517 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000030878ENSMUST00000115176ENSMUST00000127975ENSMUST00000142888
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000030878 0.031±0.00 N/A N/A N/A 0.009±0.00 0.021±0.00 N/A 0.264±0.03 0.027±0.00
ENSMUST00000115176 0.013±0.00 0.050±0.00 0.057±0.02 N/A 0.007±0.00 N/A 0.040±0.02 0.013±0.00 N/A
ENSMUST00000127975 0.061±0.00 N/A N/A N/A 0.006±0.00 N/A 0.088±0.00 0.030±0.00 N/A
ENSMUST00000142888 0.022±0.00 N/A 0.042±0.00 0.033±0.00 N/A N/A 0.045±0.02 N/A 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RC CIL_0001RC_0003 CGP 5:21785283-21865604
CIL_0005C9 CIL_0005C9_0002 CGP 5:21810655-22344702

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007605 IEA sensory perception of sound
GO:0008271 IEA secondary active sulfate transmembrane transporter activity
GO:0008360 IEA regulation of cell shape
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016328 IDA lateral plasma membrane
GO:0030507 IDA spectrin binding
GO:0042391 IDA regulation of membrane potential
GO:1902358 IEA sulfate transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022424 slc26a5 solute carrier family 26, member 5 protein_coding Danio_rerio
ENSG00000170615 SLC26A5 solute carrier family 26 (anion exchanger), member 5 protein_coding Homo_sapiens

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