C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020101-ENSDARG00000022424 CGP 7955 4:13992340-14019421
GeneTranscriptPositionBiotype
ENSDARG00000020101 (psmc2)
proteasome (prosome, macropain) 26S subunit, ATPase 2 		ENSDART00000019647 (psmc2-001) 13992340-13997751 protein_coding
ENSDARG00000022424 (slc26a5)
solute carrier family 26, member 5 		ENSDART00000038642 (slc26a5-001) 13997929-14019421 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001RC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161057-ENSG00000170615 CGP 9606 7:103344254-103446177
GeneTranscriptPositionBiotype
ENSG00000161057 (PSMC2)
proteasome (prosome, macropain) 26S subunit, ATPase, 2 		ENST00000292644 (PSMC2-201) 103347712-103369389 protein_coding
ENST00000425206 (PSMC2-002) 103344266-103362057 protein_coding
ENST00000435765 (PSMC2-001) 103344914-103369395 protein_coding
ENST00000457587 (PSMC2-003) 103344254-103362057 protein_coding
ENST00000460021 (PSMC2-004) 103353919-103362467 retained_intron
ENSG00000234715 (CTB-107G13.1)
 ENST00000422488 (CTB-107G13.1-001) 103445207-103514007 antisense
ENSG00000235354 (CTA-276O3.4)
 ENST00000452798 (CTA-276O3.4-001) 103348601-103348771 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001RC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028932-ENSMUSG00000029015 CGP 10090 5:21785283-21865604
GeneTranscriptPositionBiotype
ENSMUSG00000028932 (Psmc2)
proteasome (prosome, macropain) 26S subunit, ATPase 2 		ENSMUST00000030769 (Psmc2-001) 21785283-21803787 protein_coding
ENSMUST00000132720 (Psmc2-002) 21794103-21798185 retained_intron
ENSMUSG00000029015 (Slc26a5)
solute carrier family 26, member 5 		ENSMUST00000030878 (Slc26a5-001) 21810655-21865604 protein_coding
ENSMUST00000115176 (Slc26a5-002) 21810655-21861998 protein_coding
ENSMUST00000127975 (Slc26a5-004) 21811149-21847332 protein_coding
ENSMUST00000142888 (Slc26a5-003) 21811018-21847380 nonsense_mediated_decay
ENSMUST00000150012 (Slc26a5-005) 21815750-21820517 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RC_0001ENSDARG00000020101ENSDART00000019647ENSDARG00000022424ENSDART00000038642CIL_0001RC_0002ENSG00000161057ENST00000292644ENST00000425206ENST00000435765ENST00000457587ENST00000460021ENSG00000234715ENST00000422488ENSG00000235354ENST00000452798CIL_0001RC_0003ENSMUSG00000028932ENSMUST00000030769ENSMUST00000132720ENSMUSG00000029015ENSMUST00000030878ENSMUST00000115176ENSMUST00000127975ENSMUST00000142888ENSMUST00000150012
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RC_0001ENSDARG00000020101ENSDART00000019647ENSDARG00000022424ENSDART00000038642CIL_0001RC_0002ENSG00000161057ENST00000292644ENST00000425206ENSG00000234715ENST00000422488ENSG00000235354ENST00000452798CIL_0001RC_0003ENSMUSG00000028932ENSMUST00000030769ENSMUSG00000029015ENSMUST00000030878ENSMUST00000115176ENSMUST00000127975ENSMUST00000142888
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020101 ENSDART00000019647 N/A N/A N/A 28.915±16.23 N/A N/A 32.878±1.62 31.764±0.00 2.367±0.00 N/A 39.328±0.00 N/A N/A N/A
ENSDARG00000022424 ENSDART00000038642 N/A N/A N/A 7.239±2.64 N/A N/A 25.710±8.66 17.179±3.93 2.548±0.00 N/A 40.082±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000161057 ENST00000292644 14.799±0.00 10.281±0.00 8.803±0.00 12.027±5.22 11.066±5.25 9.861±3.80 8.035±4.67 14.310±6.03 8.090±4.59 7.102±0.40 13.638±6.41 12.612±4.00 4.891±1.74 6.807±3.47
ENST00000425206 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.072±0.00 N/A N/A N/A N/A
ENST00000435765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234715 ENST00000422488 0.039±0.00 N/A N/A 0.054±0.00 0.042±0.00 N/A 0.009±0.00 0.056±0.00 N/A N/A N/A 0.026±0.00 N/A 0.200±0.06
ENSG00000235354 ENST00000452798 0.183±0.00 N/A N/A 0.222±0.00 0.198±0.00 N/A 0.540±0.00 0.204±0.00 0.355±0.00 1.104±0.00 0.170±0.00 0.599±0.00 N/A 0.535±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028932 ENSMUST00000030769 21.417±1.72 5.863±2.54 43.107±5.25 33.372±12.16 12.590±4.10 11.774±1.79 21.714±0.96 21.168±5.37 32.887±15.81 14.752±4.41 53.361±1.04 22.775±20.10 57.013±16.30 109.546±3.96
ENSMUST00000132720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029015 ENSMUST00000030878 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.009±0.00 0.021±0.00 N/A N/A 0.264±0.03 0.027±0.00
ENSMUST00000115176 N/A N/A N/A 0.013±0.00 0.050±0.00 0.057±0.02 N/A N/A 0.007±0.00 N/A N/A 0.040±0.02 0.013±0.00 N/A
ENSMUST00000127975 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.088±0.00 0.030±0.00 N/A
ENSMUST00000142888 N/A N/A N/A 0.022±0.00 N/A 0.042±0.00 0.033±0.00 N/A N/A N/A N/A 0.045±0.02 N/A 0.014±0.00
ENSMUST00000150012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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