C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005C9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170615-ENSG00000189056 CGP 9606 7:103352730-103989516
GeneTranscriptPositionBiotype
ENSG00000161057 (PSMC2)
proteasome (prosome, macropain) 26S subunit, ATPase, 2 		ENST00000292644 (PSMC2-201) 103347712-103369389 protein_coding
ENST00000425206 (PSMC2-002) 103344266-103362057 protein_coding
ENST00000435765 (PSMC2-001) 103344914-103369395 protein_coding
ENST00000457587 (PSMC2-003) 103344254-103362057 protein_coding
ENST00000460021 (PSMC2-004) 103353919-103362467 retained_intron
ENSG00000189056 (RELN)
reelin 		ENST00000343529 (RELN-002) 103471784-103989516 protein_coding
ENST00000424685 (RELN-201) 103471784-103989516 protein_coding
ENST00000428762 (RELN-001) 103471784-103989516 protein_coding
ENST00000429186 (RELN-009) 103472230-103482948 protein_coding
ENST00000473457 (RELN-006) 103627909-103630136 processed_transcript
ENST00000473945 (RELN-008) 103481941-103486257 processed_transcript
ENST00000478148 (RELN-007) 103523500-103539488 retained_intron
ENSG00000222386 (RN7SKP86)
RNA, 7SK small nuclear pseudogene 86 		ENST00000410454 (RN7SKP86-201) 103484208-103484539 misc_RNA
ENSG00000234715 (CTB-107G13.1)
 ENST00000422488 (CTB-107G13.1-001) 103445207-103514007 antisense
CIL_0005C9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029015-ENSMUSG00000042453 CGP 10090 5:21810655-22344702
GeneTranscriptPositionBiotype
ENSMUSG00000029015 (Slc26a5)
solute carrier family 26, member 5 		ENSMUST00000030878 (Slc26a5-001) 21810655-21865604 protein_coding
ENSMUST00000115176 (Slc26a5-002) 21810655-21861998 protein_coding
ENSMUST00000127975 (Slc26a5-004) 21811149-21847332 protein_coding
ENSMUST00000142888 (Slc26a5-003) 21811018-21847380 nonsense_mediated_decay
ENSMUST00000150012 (Slc26a5-005) 21815750-21820517 processed_transcript
ENSMUSG00000042453 (Reln)
reelin 		ENSMUST00000062372 (Reln-002) 21885250-22344690 protein_coding
ENSMUST00000159741 (Reln-012) 22047524-22048753 retained_intron
ENSMUST00000159768 (Reln-009) 21898724-21932719 retained_intron
ENSMUST00000160707 (Reln-006) 22224874-22344690 retained_intron
ENSMUST00000160791 (Reln-013) 21884895-21896068 processed_transcript
ENSMUST00000161353 (Reln-010) 21976038-22010264 retained_intron
ENSMUST00000161356 (Reln-001) 21884454-22344702 protein_coding
ENSMUST00000161782 (Reln-007) 22342071-22344702 processed_transcript
ENSMUST00000162427 (Reln-008) 22003033-22344690 retained_intron
ENSMUST00000162622 (Reln-005) 22170326-22344690 retained_intron
ENSMUST00000162637 (Reln-004) 22128073-22344690 retained_intron
ENSMUST00000162876 (Reln-011) 22060313-22134669 nonsense_mediated_decay
ENSMUSG00000073152 (Gm10475)
predicted gene 10475 		ENSMUST00000084713 (Gm10475-001) 21910931-21954014 antisense
ENSMUSG00000089793 (Gm16112)
predicted gene 16112 		ENSMUST00000159075 (Gm16112-001) 22292787-22293168 processed_pseudogene
ENSMUSG00000089910 (Gm16113)
predicted gene 16113 		ENSMUST00000159629 (Gm16113-001) 22281211-22281582 processed_pseudogene
ENSMUSG00000090008 (Gm16111)
predicted gene 16111 		ENSMUST00000162128 (Gm16111-001) 21889780-21890064 processed_pseudogene
ENSMUSG00000090226 (Gm16110)
predicted gene 16110 		ENSMUST00000161473 (Gm16110-001) 22334442-22336118 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005C9_0001ENSG00000161057ENST00000292644ENST00000425206ENST00000435765ENST00000457587ENST00000460021ENSG00000189056ENST00000343529ENST00000424685ENST00000428762ENST00000429186ENST00000473457ENST00000473945ENST00000478148ENSG00000222386ENST00000410454ENSG00000234715ENST00000422488CIL_0005C9_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005C9_0001ENSG00000161057ENST00000292644ENST00000425206ENSG00000189056ENST00000343529ENST00000424685ENST00000428762ENST00000429186ENSG00000222386ENST00000410454ENSG00000234715ENST00000422488CIL_0005C9_0002ENSMUSG00000029015ENSMUST00000030878ENSMUST00000115176ENSMUST00000127975ENSMUST00000142888ENSMUSG00000042453ENSMUST00000062372ENSMUST00000159768ENSMUST00000160791ENSMUST00000161356ENSMUST00000162622ENSMUSG00000073152ENSMUST00000084713ENSMUSG00000089793ENSMUST00000159075ENSMUSG00000089910ENSMUST00000159629ENSMUSG00000090008ENSMUST00000162128ENSMUSG00000090226ENSMUST00000161473
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000161057 ENST00000292644 14.799±0.00 10.281±0.00 8.803±0.00 12.027±5.22 11.066±5.25 9.861±3.80 8.035±4.67 14.310±6.03 8.090±4.59 7.102±0.40 13.638±6.41 12.612±4.00 4.891±1.74 6.807±3.47
ENST00000425206 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.072±0.00 N/A N/A N/A N/A
ENST00000435765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189056 ENST00000343529 0.298±0.00 0.442±0.00 0.044±0.00 2.845±0.00 0.189±0.00 0.373±0.09 0.134±0.08 3.496±3.23 1.671±1.02 0.164±0.00 0.124±0.05 0.207±0.08 0.073±0.07 0.585±0.09
ENST00000424685 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A
ENST00000428762 N/A N/A 0.044±0.00 1.324±0.58 0.636±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 0.085±0.08 N/A
ENST00000429186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 0.039±0.00 N/A
ENST00000473457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222386 ENST00000410454 N/A N/A N/A 0.057±0.00 N/A 2.327±0.00 N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000234715 ENST00000422488 0.039±0.00 N/A N/A 0.054±0.00 0.042±0.00 N/A 0.009±0.00 0.056±0.00 N/A N/A N/A 0.026±0.00 N/A 0.200±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029015 ENSMUST00000030878 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.009±0.00 0.021±0.00 N/A N/A 0.264±0.03 0.027±0.00
ENSMUST00000115176 N/A N/A N/A 0.013±0.00 0.050±0.00 0.057±0.02 N/A N/A 0.007±0.00 N/A N/A 0.040±0.02 0.013±0.00 N/A
ENSMUST00000127975 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.088±0.00 0.030±0.00 N/A
ENSMUST00000142888 N/A N/A N/A 0.022±0.00 N/A 0.042±0.00 0.033±0.00 N/A N/A N/A N/A 0.045±0.02 N/A 0.014±0.00
ENSMUST00000150012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042453 ENSMUST00000062372 N/A 0.233±0.05 0.777±0.00 N/A 0.489±0.19 0.846±0.23 0.169±0.08 0.172±0.08 5.267±0.19 0.634±0.24 N/A 2.670±0.84 N/A N/A
ENSMUST00000159741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159768 0.207±0.03 0.696±0.22 1.239±0.04 9.269±1.58 N/A 0.573±0.00 0.263±0.02 0.426±0.12 5.626±1.10 N/A N/A N/A 0.071±0.00 0.837±0.09
ENSMUST00000160707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160791 N/A N/A N/A N/A N/A N/A N/A N/A 13.962±0.00 N/A 0.663±0.18 N/A 0.171±0.03 1.115±0.00
ENSMUST00000161353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161356 N/A N/A N/A 8.584±1.30 N/A N/A 0.099±0.00 N/A N/A N/A N/A 1.521±0.29 0.068±0.00 N/A
ENSMUST00000161782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162622 N/A 0.645±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000073152 ENSMUST00000084713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.061±0.22
ENSMUSG00000089793 ENSMUST00000159075 N/A N/A 0.037±0.00 0.102±0.00 N/A N/A N/A N/A 0.100±0.08 N/A N/A N/A N/A N/A
ENSMUSG00000089910 ENSMUST00000159629 N/A N/A N/A 0.325±0.14 N/A N/A N/A N/A 0.189±0.16 0.173±0.00 N/A 0.596±0.00 0.124±0.00 0.369±0.09
ENSMUSG00000090008 ENSMUST00000162128 0.694±0.16 0.755±0.00 0.147±0.00 1.462±0.76 0.875±0.09 0.814±0.00 0.585±0.00 N/A 0.806±0.69 N/A 0.248±0.09 N/A 0.225±0.00 0.438±0.12
ENSMUSG00000090226 ENSMUST00000161473 N/A N/A N/A 0.067±0.03 N/A N/A N/A N/A 0.178±0.02 N/A N/A N/A 0.028±0.00 N/A

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