C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peptidase (mitochondrial processing) beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029017 Pmpcb 10090 + 5:21737141-21757152 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030882 Pmpcb-001 21737141-21757152 protein_coding
  ENSMUST00000125693 Pmpcb-002 21737141-21757152 retained_intron
  ENSMUST00000137334 Pmpcb-007 21756781-21757146 retained_intron
  ENSMUST00000141022 Pmpcb-008 21756645-21757152 nonsense_mediated_decay
  ENSMUST00000147236 Pmpcb-004 21738881-21741069 retained_intron
  ENSMUST00000149648 Pmpcb-003 21738036-21742765 protein_coding
  ENSMUST00000150861 Pmpcb-006 21742740-21743539 retained_intron
  ENSMUST00000152440 Pmpcb-005 21756519-21757146 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030882ENSMUST00000125693ENSMUST00000152440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030882 36.030±8.16 49.908±3.08 27.048±2.74 31.167±2.79 34.185±14.37 19.991±1.97 59.733±3.01 74.608±5.53 43.470±7.92 15.415±0.81 34.043±1.91 35.018±16.36 44.784±12.06 55.149±11.06
ENSMUST00000125693 1.717±0.16 N/A 1.253±0.05 1.291±0.00 N/A N/A N/A N/A N/A 0.979±0.01 N/A 2.010±0.37 N/A N/A
ENSMUST00000152440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.519±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0002 VISTA 5:21195900-21797355
CIL_0005CJ CIL_0005CJ_0002 CGP 5:21662901-21757152
CIL_0001RL CIL_0001RL_0003 CGP 5:21737141-21785251

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004222 IEA metalloendopeptidase activity
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006508 IEA proteolysis
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016979 pmpcb peptidase (mitochondrial processing) beta protein_coding Danio_rerio
ENSG00000105819 PMPCB peptidase (mitochondrial processing) beta protein_coding Homo_sapiens

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