C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016979-ENSDARG00000070477 CGP 7955 4:1620084-1645108
GeneTranscriptPositionBiotype
ENSDARG00000016979 (pmpcb)
peptidase (mitochondrial processing) beta 		ENSDART00000026963 (pmpcb-001) 1620084-1630363 protein_coding
ENSDART00000150516 (pmpcb-002) 1623106-1625934 retained_intron
ENSDART00000150768 (pmpcb-003) 1624556-1628059 retained_intron
ENSDARG00000070477 (dnajc2)
DnaJ (Hsp40) homolog, subfamily C, member 2 		ENSDART00000103463 (dnajc2-201) 1630217-1645108 protein_coding
ENSDART00000123089 (dnajc2-001) 1630121-1635407 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001RL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105819-ENSG00000105821 CGP 9606 7:103297422-103344873
GeneTranscriptPositionBiotype
ENSG00000105819 (PMPCB)
peptidase (mitochondrial processing) beta 		ENST00000249269 (PMPCB-001) 103297422-103313235 protein_coding
ENST00000428154 (PMPCB-007) 103297435-103312415 protein_coding
ENST00000443722 (PMPCB-006) 103297454-103312365 nonsense_mediated_decay
ENST00000444457 (PMPCB-002) 103297456-103329511 nonsense_mediated_decay
ENST00000453466 (PMPCB-004) 103297457-103312312 nonsense_mediated_decay
ENST00000456433 (PMPCB-009) 103297453-103310475 nonsense_mediated_decay
ENST00000469560 (PMPCB-008) 103310578-103312351 retained_intron
ENST00000498530 (PMPCB-005) 103297456-103309259 retained_intron
ENSG00000161057 (PSMC2)
proteasome (prosome, macropain) 26S subunit, ATPase, 2 		ENST00000292644 (PSMC2-201) 103347712-103369389 protein_coding
ENST00000425206 (PSMC2-002) 103344266-103362057 protein_coding
ENST00000435765 (PSMC2-001) 103344914-103369395 protein_coding
ENST00000457587 (PSMC2-003) 103344254-103362057 protein_coding
ENST00000460021 (PSMC2-004) 103353919-103362467 retained_intron

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001RL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029017-ENSMUSG00000029014 CGP 10090 5:21737141-21785251
GeneTranscriptPositionBiotype
ENSMUSG00000029014 (Dnajc2)
DnaJ (Hsp40) homolog, subfamily C, member 2 		ENSMUST00000030771 (Dnajc2-001) 21757267-21785251 protein_coding
ENSMUST00000115192 (Dnajc2-002) 21774507-21785185 protein_coding
ENSMUST00000115193 (Dnajc2-003) 21757272-21785184 protein_coding
ENSMUST00000115195 (Dnajc2-006) 21757282-21785216 protein_coding
ENSMUST00000132962 (Dnajc2-004) 21757281-21785170 retained_intron
ENSMUST00000145955 (Dnajc2-007) 21766418-21768667 retained_intron
ENSMUST00000147987 (Dnajc2-005) 21773522-21785154 retained_intron
ENSMUSG00000029017 (Pmpcb)
peptidase (mitochondrial processing) beta 		ENSMUST00000030882 (Pmpcb-001) 21737141-21757152 protein_coding
ENSMUST00000125693 (Pmpcb-002) 21737141-21757152 retained_intron
ENSMUST00000137334 (Pmpcb-007) 21756781-21757146 retained_intron
ENSMUST00000141022 (Pmpcb-008) 21756645-21757152 nonsense_mediated_decay
ENSMUST00000147236 (Pmpcb-004) 21738881-21741069 retained_intron
ENSMUST00000149648 (Pmpcb-003) 21738036-21742765 protein_coding
ENSMUST00000150861 (Pmpcb-006) 21742740-21743539 retained_intron
ENSMUST00000152440 (Pmpcb-005) 21756519-21757146 retained_intron
ENSMUSG00000083006 (Gm15715)
predicted gene 15715 		ENSMUST00000118032 (Gm15715-001) 21748231-21748513 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RL_0001ENSDARG00000016979ENSDART00000026963ENSDART00000150516ENSDART00000150768ENSDARG00000070477ENSDART00000103463ENSDART00000123089CIL_0001RL_0002ENSG00000105819ENST00000249269ENST00000428154ENST00000443722ENST00000444457ENST00000453466ENST00000456433ENST00000469560ENST00000498530ENSG00000161057ENST00000292644ENST00000425206ENST00000435765ENST00000457587ENST00000460021CIL_0001RL_0003ENSMUSG00000029014ENSMUST00000030771ENSMUST00000115192ENSMUST00000115193ENSMUST00000115195ENSMUST00000132962ENSMUST00000145955ENSMUST00000147987ENSMUSG00000029017ENSMUST00000030882ENSMUST00000125693ENSMUST00000137334ENSMUST00000141022ENSMUST00000147236ENSMUST00000149648ENSMUST00000150861ENSMUST00000152440ENSMUSG00000083006ENSMUST00000118032
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RL_0001ENSDARG00000016979ENSDART00000026963ENSDARG00000070477ENSDART00000103463ENSDART00000123089CIL_0001RL_0002ENSG00000105819ENST00000249269ENST00000428154ENST00000453466ENST00000456433ENST00000498530ENSG00000161057ENST00000292644ENST00000425206CIL_0001RL_0003ENSMUSG00000029014ENSMUST00000030771ENSMUST00000115193ENSMUST00000115195ENSMUST00000132962ENSMUSG00000029017ENSMUST00000030882ENSMUST00000125693ENSMUST00000152440ENSMUSG00000083006ENSMUST00000118032
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016979 ENSDART00000026963 N/A N/A N/A 9.054±1.30 N/A N/A 17.112±3.70 7.061±0.00 2.790±0.00 N/A 19.240±0.00 N/A N/A N/A
ENSDART00000150516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070477 ENSDART00000103463 N/A N/A N/A 4.318±0.00 N/A N/A 3.589±0.45 7.619±0.00 0.907±0.00 N/A 3.281±0.00 N/A N/A N/A
ENSDART00000123089 N/A N/A N/A N/A N/A N/A 5.989±0.00 N/A 2.070±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105819 ENST00000249269 N/A N/A N/A 5.622±0.00 2.391±0.00 3.224±0.00 2.199±0.00 4.163±0.00 N/A N/A 1.124±0.00 3.830±0.00 N/A N/A
ENST00000428154 6.192±0.00 10.690±0.00 3.254±0.00 6.861±3.11 6.535±2.38 8.070±0.00 5.705±1.42 11.080±5.80 8.008±0.54 4.605±0.52 3.101±0.01 19.376±15.13 10.336±6.70 22.815±6.91
ENST00000443722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453466 15.470±0.00 21.444±0.00 N/A 19.816±0.00 19.248±0.00 16.496±0.00 15.907±0.00 21.023±0.00 15.073±0.00 9.092±0.00 4.029±1.74 18.984±0.56 11.244±2.33 29.570±3.21
ENST00000456433 N/A N/A 3.659±0.00 N/A N/A N/A N/A 6.858±0.00 N/A 5.481±0.00 N/A 10.099±0.00 N/A N/A
ENST00000469560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498530 N/A N/A N/A 6.667±0.00 N/A 7.491±0.00 2.901±0.00 4.407±0.00 N/A 3.189±0.00 N/A N/A 30.662±0.00 40.003±0.00
ENSG00000161057 ENST00000292644 14.799±0.00 10.281±0.00 8.803±0.00 12.027±5.22 11.066±5.25 9.861±3.80 8.035±4.67 14.310±6.03 8.090±4.59 7.102±0.40 13.638±6.41 12.612±4.00 4.891±1.74 6.807±3.47
ENST00000425206 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.072±0.00 N/A N/A N/A N/A
ENST00000435765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029014 ENSMUST00000030771 3.630±3.09 N/A 5.869±0.02 13.537±3.23 1.886±1.02 N/A 2.078±0.88 4.185±2.02 9.119±5.51 4.261±4.55 7.851±0.52 17.303±12.19 31.705±32.12 52.710±21.45
ENSMUST00000115192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115193 N/A N/A N/A N/A 0.429±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115195 N/A N/A N/A N/A N/A N/A N/A N/A 1.351±0.23 N/A 1.168±0.00 7.348±0.90 3.797±0.00 87.537±0.00
ENSMUST00000132962 0.284±0.00 N/A 0.884±0.09 2.113±0.51 N/A N/A 0.166±0.00 N/A N/A N/A N/A 2.113±1.10 N/A N/A
ENSMUST00000145955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029017 ENSMUST00000030882 36.030±8.16 49.908±3.08 27.048±2.74 31.167±2.79 34.185±14.37 19.991±1.97 59.733±3.01 74.608±5.53 43.470±7.92 15.415±0.81 34.043±1.91 35.018±16.36 44.784±12.06 55.149±11.06
ENSMUST00000125693 1.717±0.16 N/A 1.253±0.05 1.291±0.00 N/A N/A N/A N/A N/A 0.979±0.01 N/A 2.010±0.37 N/A N/A
ENSMUST00000137334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.519±0.00 N/A
ENSMUSG00000083006 ENSMUST00000118032 0.350±0.00 0.531±0.02 0.331±0.00 0.134±0.00 0.597±0.00 0.692±0.00 0.416±0.15 1.511±0.00 0.323±0.18 0.504±0.01 0.461±0.00 1.104±0.27 0.308±0.06 N/A

Loading