C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: peptidase (mitochondrial processing) beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105819 PMPCB 9606 + 7:103297422-103329511 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249269 PMPCB-001 103297422-103313235 protein_coding
  ENST00000428154 PMPCB-007 103297435-103312415 protein_coding
  ENST00000443722 PMPCB-006 103297454-103312365 nonsense_mediated_decay
  ENST00000444457 PMPCB-002 103297456-103329511 nonsense_mediated_decay
  ENST00000453466 PMPCB-004 103297457-103312312 nonsense_mediated_decay
  ENST00000456433 PMPCB-009 103297453-103310475 nonsense_mediated_decay
  ENST00000469560 PMPCB-008 103310578-103312351 retained_intron
  ENST00000498530 PMPCB-005 103297456-103309259 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249269ENST00000428154ENST00000453466ENST00000456433ENST00000498530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249269 N/A N/A N/A 5.622±0.00 2.391±0.00 3.224±0.00 2.199±0.00 4.163±0.00 N/A N/A 1.124±0.00 3.830±0.00 N/A N/A
ENST00000428154 6.192±0.00 10.690±0.00 3.254±0.00 6.861±3.11 6.535±2.38 8.070±0.00 5.705±1.42 11.080±5.80 8.008±0.54 4.605±0.52 3.101±0.01 19.376±15.13 10.336±6.70 22.815±6.91
ENST00000453466 15.470±0.00 21.444±0.00 N/A 19.816±0.00 19.248±0.00 16.496±0.00 15.907±0.00 21.023±0.00 15.073±0.00 9.092±0.00 4.029±1.74 18.984±0.56 11.244±2.33 29.570±3.21
ENST00000456433 N/A N/A 3.659±0.00 N/A N/A N/A N/A 6.858±0.00 N/A 5.481±0.00 N/A 10.099±0.00 N/A N/A
ENST00000498530 N/A N/A N/A 6.667±0.00 N/A 7.491±0.00 2.901±0.00 4.407±0.00 N/A 3.189±0.00 N/A N/A 30.662±0.00 40.003±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CJ CIL_0005CJ_0001 CGP 7:103099776-103329511
CIL_0001RL CIL_0001RL_0002 CGP 7:103297422-103344873

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004222 IEA metalloendopeptidase activity
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006508 IEA proteolysis
GO:0006626 TAS protein targeting to mitochondrion
GO:0008152 IEA metabolic process
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016979 pmpcb peptidase (mitochondrial processing) beta protein_coding Danio_rerio
ENSMUSG00000029017 Pmpcb peptidase (mitochondrial processing) beta protein_coding Mus_musculus

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