| Transcript ID | Ovary | Placenta |
|---|---|---|
| ENSMUST00000125603 | 9.368±0.00 | 11.914±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | sorting nexin 17 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000125603  |
Snx17-003 |
ENSMUSG00000029146 |
10090 | + |
5:31193335-31198900  |
nonsense_mediated_decay |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0001DH | CIL_0001DH_0002 | CGP | 5:31156005-31193430 |
| CIL_000133 | CIL_000133_0002 | CGP | 5:31187558-31198900 |
| CIL_0001DJ | CIL_0001DJ_0002 | CGP | 5:31193227-31202303 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0005737 | IDA | cytoplasm |
| GO:0005768 | IPI | endosome |
| GO:0006898 | IDA | receptor-mediated endocytosis |
| GO:0010008 | ISO | endosome membrane |
| GO:0043234 | ISO | protein complex |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000233575
|
SNX17-001 | protein_coding | Homo_sapiens | 0 | 1192 |
|
ENST00000427123
|
SNX17-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 1192 |
|
ENST00000440760
|
SNX17-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 1192 |
|
ENST00000453453
|
SNX17-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 1768 |
|
ENST00000464279
|
SNX17-008 | retained_intron | Homo_sapiens | 9e-16 | 88 |
|
ENST00000493711
|
SNX17-009 | retained_intron | Homo_sapiens | 0 | 224 |
|
ENST00000494893
|
SNX17-004 | retained_intron | Homo_sapiens | 0 | 346 |
|
ENST00000537606
|
SNX17-201 | protein_coding | Homo_sapiens | 0 | 1192 |
