C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031029 Snx17-001 ENSMUSG00000029146 10090 + 5:31193227-31198900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031029 55.495±5.62 45.877±3.77 57.249±4.52 51.126±12.48 38.892±9.57 44.005±4.91 28.237±2.62 47.670±2.19 18.308±9.32 54.154±5.79 14.145±1.67 48.799±18.07 36.849±14.87 13.228±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DH CIL_0001DH_0002 CGP 5:31156005-31193430
CIL_000133 CIL_000133_0002 CGP 5:31187558-31198900
CIL_0001DJ CIL_0001DJ_0002 CGP 5:31193227-31202303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IPI endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0006898 IDA receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0008022 IEA protein C-terminus binding
GO:0010008 ISO endosome membrane
GO:0015031 IEA protein transport
GO:0016023 ISS cytoplasmic membrane-bounded vesicle
GO:0035091 ISS phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 ISO protein complex
GO:0050750 IEA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233575 SNX17-001 protein_coding Homo_sapiens 0 2239
ENST00000427123 SNX17-003 nonsense_mediated_decay Homo_sapiens 0 1775
ENST00000440760 SNX17-002 nonsense_mediated_decay Homo_sapiens 0 1775
ENST00000453453 SNX17-005 nonsense_mediated_decay Homo_sapiens 0 1192
ENST00000464279 SNX17-008 retained_intron Homo_sapiens 0 503
ENST00000484886 SNX17-006 retained_intron Homo_sapiens 0 265
ENST00000489402 SNX17-007 retained_intron Homo_sapiens 0 420
ENST00000493711 SNX17-009 retained_intron Homo_sapiens 0 224
ENST00000494893 SNX17-004 retained_intron Homo_sapiens 0 372
ENST00000537606 SNX17-201 protein_coding Homo_sapiens 0 1943

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