C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147145 Snx17-002 ENSMUSG00000029146 10090 + 5:31193294-31198894 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryPlacentaENSMUST00000147145
Transcript ID Adrenal Breast Colon Liver Lung Ovary Placenta
ENSMUST00000147145 26.530±6.11 16.100±0.05 14.450±2.77 7.102±0.00 19.510±0.00 27.321±13.33 10.657±2.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DH CIL_0001DH_0002 CGP 5:31156005-31193430
CIL_000133 CIL_000133_0002 CGP 5:31187558-31198900
CIL_0001DJ CIL_0001DJ_0002 CGP 5:31193227-31202303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IPI endosome
GO:0006898 IDA receptor-mediated endocytosis
GO:0010008 ISO endosome membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0043234 ISO protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233575 SNX17-001 protein_coding Homo_sapiens 0 1775
ENST00000427123 SNX17-003 nonsense_mediated_decay Homo_sapiens 0 2327
ENST00000440760 SNX17-002 nonsense_mediated_decay Homo_sapiens 0 1775
ENST00000453453 SNX17-005 nonsense_mediated_decay Homo_sapiens 0 1192
ENST00000464279 SNX17-008 retained_intron Homo_sapiens 0 425
ENST00000484886 SNX17-006 retained_intron Homo_sapiens 0 265
ENST00000489402 SNX17-007 retained_intron Homo_sapiens 0 420
ENST00000493711 SNX17-009 retained_intron Homo_sapiens 0 224
ENST00000494893 SNX17-004 retained_intron Homo_sapiens 0 372
ENST00000537606 SNX17-201 protein_coding Homo_sapiens 0 1775

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