C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054979 Aff1-001 ENSMUSG00000029313 10090 + 5:103754162-103855322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054979 3.516±1.05 2.235±0.99 4.553±0.49 0.646±0.21 2.999±0.86 3.998±1.58 2.845±0.33 5.101±1.48 2.758±1.35 8.559±0.83 3.757±0.72 3.809±1.72 1.149±0.66 0.481±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J2 CIL_0006J2_0002 CGP 5:103648039-103855322
CIL_0000BR CIL_0000BR_0002 CGP 5:103692374-103911259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307808 AFF1-001 protein_coding Homo_sapiens 0 1162
ENST00000395146 AFF1-201 protein_coding Homo_sapiens 0 1182
ENST00000503477 AFF1-008 protein_coding Homo_sapiens 0 320
ENST00000504956 AFF1-002 retained_intron Homo_sapiens 0 250
ENST00000507468 AFF1-007 protein_coding Homo_sapiens 0 416
ENST00000511722 AFF1-003 protein_coding Homo_sapiens 0 409
ENST00000514970 AFF1-004 protein_coding Homo_sapiens 0 411
ENST00000544085 AFF1-202 protein_coding Homo_sapiens 0 1184

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