C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031256 Aff1-201 ENSMUSG00000029313 10090 + 5:103754573-103855322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMuscleOvaryPlacentaENSMUST00000031256
Transcript ID Breast Colon Heart Liver Muscle Ovary Placenta
ENSMUST00000031256 0.802±0.00 1.369±0.00 0.450±0.00 1.752±1.20 1.090±0.00 5.294±0.00 0.683±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J2 CIL_0006J2_0002 CGP 5:103648039-103855322
CIL_0000BR CIL_0000BR_0002 CGP 5:103692374-103911259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0008023 IEA transcription elongation factor complex
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307808 AFF1-001 protein_coding Homo_sapiens 0 1162
ENST00000395146 AFF1-201 protein_coding Homo_sapiens 0 1182
ENST00000503477 AFF1-008 protein_coding Homo_sapiens 0 320
ENST00000504956 AFF1-002 retained_intron Homo_sapiens 0 250
ENST00000507468 AFF1-007 protein_coding Homo_sapiens 0 416
ENST00000511722 AFF1-003 protein_coding Homo_sapiens 0 409
ENST00000514970 AFF1-004 protein_coding Homo_sapiens 0 411
ENST00000544085 AFF1-202 protein_coding Homo_sapiens 0 1184

Loading