C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphoserine phosphatase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029446 Psph 10090 - 5:129765558-129787252 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031399 Psph-001 129765558-129787204 protein_coding
  ENSMUST00000118268 Psph-004 129765558-129771615 protein_coding
  ENSMUST00000136280 Psph-003 129769243-129771155 processed_transcript
  ENSMUST00000136507 Psph-002 129770700-129786975 protein_coding
  ENSMUST00000178244 Psph-005 129776866-129787252 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031399ENSMUST00000136280ENSMUST00000136507ENSMUST00000178244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031399 14.323±4.06 9.131±1.32 5.232±0.94 7.793±2.08 12.502±2.81 3.558±0.83 2.257±0.50 9.408±1.07 13.545±11.16 4.856±0.67 4.180±0.25 5.683±1.23 21.642±15.50 8.887±0.71
ENSMUST00000136280 N/A N/A N/A N/A N/A N/A N/A 8.844±1.40 N/A N/A N/A N/A N/A N/A
ENSMUST00000136507 N/A 11.408±1.99 N/A N/A N/A N/A 1.835±0.25 N/A N/A N/A 3.303±0.77 4.593±0.96 N/A N/A
ENSMUST00000178244 1.012±0.01 1.498±0.18 0.598±0.13 0.561±0.01 1.212±0.40 N/A 0.243±0.05 0.632±0.00 0.397±0.11 0.625±0.09 0.359±0.05 1.080±0.21 N/A 0.744±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IC CIL_0004IC_0002 CGP 5:129725063-129787252
CIL_000645 CIL_000645_0002 CGP 5:129765558-129845820

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IBA:ISS magnesium ion binding
GO:0004647 IBA:ISS phosphoserine phosphatase activity
GO:0005509 ISS calcium ion binding
GO:0005737 IBA cytoplasm
GO:0006563 ISS L-serine metabolic process
GO:0006564 IBA L-serine biosynthetic process
GO:0009612 IEA response to mechanical stimulus
GO:0016311 IBA dephosphorylation
GO:0031667 IEA response to nutrient levels
GO:0033574 IEA response to testosterone
GO:0042803 IEA protein homodimerization activity
GO:0043005 IEA neuron projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040314 psph phosphoserine phosphatase protein_coding Danio_rerio
ENSG00000146733 PSPH phosphoserine phosphatase protein_coding Homo_sapiens

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