C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 29 (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029462 Vps29 10090 + 5:122354369-122364984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111729 Vps29-003 122354422-122363211 nonsense_mediated_decay
  ENSMUST00000117868 Vps29-007 122354406-122362492 protein_coding
  ENSMUST00000118765 Vps29-008 122354422-122363270 protein_coding
  ENSMUST00000118830 Vps29-002 122354385-122363286 protein_coding
  ENSMUST00000132785 Vps29-006 122354409-122362237 processed_transcript
  ENSMUST00000145821 Vps29-004 122354440-122362186 protein_coding
  ENSMUST00000154686 Vps29-005 122354460-122362268 nonsense_mediated_decay
  ENSMUST00000155671 Vps29-001 122354369-122364984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111729ENSMUST00000117868ENSMUST00000118830ENSMUST00000145821ENSMUST00000154686ENSMUST00000155671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111729 17.179±1.06 N/A 15.906±0.00 N/A 26.303±0.00 N/A 8.825±2.54 19.712±0.50 13.519±1.07 N/A 5.347±1.00 26.795±0.63 30.159±10.25
ENSMUST00000117868 24.639±4.43 19.942±1.87 20.823±0.00 N/A 19.810±2.54 N/A 10.345±0.94 36.724±7.79 18.102±3.47 20.005±1.38 N/A 28.484±2.46 37.487±1.79
ENSMUST00000118830 14.333±0.38 N/A 24.446±2.37 27.062±8.00 N/A 22.704±6.66 8.713±1.15 15.733±0.20 22.816±7.82 N/A 7.009±1.36 N/A 25.480±0.98
ENSMUST00000145821 N/A N/A N/A 96.243±0.00 N/A N/A N/A N/A N/A N/A N/A 53.161±0.00 110.519±7.92
ENSMUST00000154686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 56.660±14.84
ENSMUST00000155671 N/A N/A 5.145±0.20 7.534±2.42 N/A N/A N/A 5.588±0.41 3.444±0.52 N/A 1.845±0.25 3.694±1.27 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004647 IEA phosphoserine phosphatase activity
GO:0005737 IEA cytoplasm
GO:0006896 ISS Golgi to vacuole transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0030904 IEA retromer complex
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069521 vps29 vacuolar protein sorting 29 (yeast) protein_coding Danio_rerio
ENSG00000111237 VPS29 vacuolar protein sorting 29 homolog (S. cerevisiae) protein_coding Homo_sapiens

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