C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 29 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111237 VPS29 9606 - 12:110491097-110502117 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360579 VPS29-002 110491523-110502099 protein_coding
  ENST00000447578 VPS29-201 110491625-110502078 protein_coding
  ENST00000546588 VPS29-005 110491691-110502092 protein_coding
  ENST00000548259 VPS29-007 110492921-110502108 processed_transcript
  ENST00000548539 VPS29-004 110491731-110496217 retained_intron
  ENST00000549578 VPS29-001 110491097-110502117 protein_coding
  ENST00000549970 VPS29-006 110491886-110502111 protein_coding
  ENST00000550267 VPS29-008 110498796-110502107 retained_intron
  ENST00000551655 VPS29-010 110496298-110502109 processed_transcript
  ENST00000552130 VPS29-003 110491624-110499546 protein_coding
  ENST00000553128 VPS29-009 110496046-110502107 processed_transcript
  ENST00000621131 VPS29-202 110491526-110501503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360579ENST00000447578ENST00000546588ENST00000548259ENST00000548539ENST00000549578ENST00000549970ENST00000621131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360579 5.224±0.00 5.916±0.00 N/A N/A 10.811±0.00 10.516±0.00 4.778±0.00 17.177±6.64 N/A 3.279±0.00 7.233±3.57 10.331±2.77 10.232±0.20 8.340±0.00
ENST00000447578 N/A N/A 3.298±0.00 22.525±0.00 20.185±0.00 4.669±0.00 3.791±0.72 5.914±0.00 5.414±0.29 6.120±0.00 N/A 10.485±0.00 7.225±1.76 N/A
ENST00000546588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.182±0.00 N/A N/A N/A
ENST00000548259 19.990±0.00 18.749±0.00 N/A N/A N/A 14.218±8.36 1.894±0.00 26.518±0.00 4.830±0.00 4.880±0.00 N/A 10.447±0.00 10.820±2.04 N/A
ENST00000548539 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.912±0.00 N/A N/A N/A N/A
ENST00000549578 N/A N/A N/A 3.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.304±0.00 N/A
ENST00000549970 17.022±0.00 18.306±0.00 2.177±0.00 N/A N/A 5.830±0.00 4.006±2.70 15.056±0.00 9.320±2.22 N/A 10.785±6.66 13.082±2.98 12.392±7.07 16.166±2.17
ENST00000621131 N/A N/A N/A N/A N/A N/A 1.065±0.00 N/A 2.518±0.00 N/A N/A 8.333±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004647 IEA phosphoserine phosphatase activity
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005829 TAS cytosol
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069521 vps29 vacuolar protein sorting 29 (yeast) protein_coding Danio_rerio
ENSMUSG00000029462 Vps29 vacuolar protein sorting 29 (S. pombe) protein_coding Mus_musculus

Loading