C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 29 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118830 Vps29-002 ENSMUSG00000029462 10090 + 5:122354385-122363286 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverMusclePlacentaENSMUST00000118830
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Muscle Placenta
ENSMUST00000118830 14.333±0.38 24.446±2.37 27.062±8.00 22.704±6.66 8.713±1.15 15.733±0.20 22.816±7.82 7.009±1.36 25.480±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004647 IEA phosphoserine phosphatase activity
GO:0006896 ISS Golgi to vacuole transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360579 VPS29-002 protein_coding Homo_sapiens 0 965
ENST00000447578 VPS29-201 protein_coding Homo_sapiens 0 881
ENST00000546588 VPS29-005 protein_coding Homo_sapiens 0 867
ENST00000548259 VPS29-007 processed_transcript Homo_sapiens 0 597
ENST00000549578 VPS29-001 protein_coding Homo_sapiens 0 917
ENST00000549970 VPS29-006 protein_coding Homo_sapiens 0 780
ENST00000552130 VPS29-003 protein_coding Homo_sapiens 0 881
ENST00000621131 VPS29-202 protein_coding Homo_sapiens 0 905

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