C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 29 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117868 Vps29-007 ENSMUSG00000029462 10090 + 5:122354406-122362492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungOvaryPlacentaENSMUST00000117868
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000117868 24.639±4.43 19.942±1.87 20.823±0.00 19.810±2.54 10.345±0.94 36.724±7.79 18.102±3.47 20.005±1.38 28.484±2.46 37.487±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006896 ISS Golgi to vacuole transport
GO:0030904 IEA retromer complex
GO:0042147 IEA retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360579 VPS29-002 protein_coding Homo_sapiens 0 580
ENST00000447578 VPS29-201 protein_coding Homo_sapiens 0 577
ENST00000546588 VPS29-005 protein_coding Homo_sapiens 0 575
ENST00000548259 VPS29-007 processed_transcript Homo_sapiens 0 660
ENST00000549578 VPS29-001 protein_coding Homo_sapiens 0 665
ENST00000549970 VPS29-006 protein_coding Homo_sapiens 0 577
ENST00000552130 VPS29-003 protein_coding Homo_sapiens 0 577
ENST00000621131 VPS29-202 protein_coding Homo_sapiens 0 575

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