C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 29 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155671 Vps29-001 ENSMUSG00000029462 10090 + 5:122354369-122364984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverMuscleOvaryENSMUST00000155671
Transcript ID Bladder Brain Kidney Liver Muscle Ovary
ENSMUST00000155671 5.145±0.20 7.534±2.42 5.588±0.41 3.444±0.52 1.845±0.25 3.694±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004647 IEA phosphoserine phosphatase activity
GO:0005737 IEA cytoplasm
GO:0006896 ISS Golgi to vacuole transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0030904 IEA retromer complex
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360579 VPS29-002 protein_coding Homo_sapiens 0 915
ENST00000447578 VPS29-201 protein_coding Homo_sapiens 0 883
ENST00000546588 VPS29-005 protein_coding Homo_sapiens 0 843
ENST00000548259 VPS29-007 processed_transcript Homo_sapiens 0 652
ENST00000549578 VPS29-001 protein_coding Homo_sapiens 0 998
ENST00000549970 VPS29-006 protein_coding Homo_sapiens 0 782
ENST00000552130 VPS29-003 protein_coding Homo_sapiens 0 885
ENST00000621131 VPS29-202 protein_coding Homo_sapiens 0 907

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