C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 29 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111729 Vps29-003 ENSMUSG00000029462 10090 + 5:122354422-122363211 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000111729
Transcript ID Adipose Bladder Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000111729 17.179±1.06 15.906±0.00 26.303±0.00 8.825±2.54 19.712±0.50 13.519±1.07 5.347±1.00 26.795±0.63 30.159±10.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006896 ISS Golgi to vacuole transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360579 VPS29-002 protein_coding Homo_sapiens 0 813
ENST00000447578 VPS29-201 protein_coding Homo_sapiens 0 813
ENST00000546588 VPS29-005 protein_coding Homo_sapiens 0 813
ENST00000548259 VPS29-007 processed_transcript Homo_sapiens 0 553
ENST00000549578 VPS29-001 protein_coding Homo_sapiens 0 813
ENST00000549970 VPS29-006 protein_coding Homo_sapiens 0 758
ENST00000552130 VPS29-003 protein_coding Homo_sapiens 0 813
ENST00000621131 VPS29-202 protein_coding Homo_sapiens 0 813

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