C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDGFA associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029623 Pdap1 10090 - 5:145128769-145140238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031627 Pdap1-001 145128769-145140238 protein_coding
  ENSMUST00000123111 Pdap1-002 145130084-145136696 processed_transcript
  ENSMUST00000143439 Pdap1-004 145131371-145135472 retained_intron
  ENSMUST00000148781 Pdap1-003 145136578-145139998 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031627ENSMUST00000123111ENSMUST00000143439
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031627 20.769±0.04 19.943±0.00 33.565±7.79 8.613±2.20 13.869±1.84 23.208±15.98 18.745±2.22 17.867±0.81 38.860±20.01 45.177±26.60 20.106±4.67
ENSMUST00000123111 N/A N/A N/A N/A N/A N/A N/A 10.786±2.66 31.215±3.44 N/A N/A
ENSMUST00000143439 N/A N/A 152.755±0.00 N/A N/A N/A N/A N/A 297.170±0.00 319.959±179.19 265.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705
CIL_0004TJ CIL_0004TJ_0002 CGP 5:145114215-145140238
CIL_0005LD CIL_0005LD_0003 CGP 5:145128769-145148078

Gene Ontology
GO IDEvidence TypeGO Description
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002967 pdap1b pdgfa associated protein 1b protein_coding Danio_rerio
ENSG00000106244 PDAP1 PDGFA associated protein 1 protein_coding Homo_sapiens

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