C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDGFA associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031627 Pdap1-001 ENSMUSG00000029623 10090 - 5:145128769-145140238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031627
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031627 20.769±0.04 19.943±0.00 33.565±7.79 8.613±2.20 13.869±1.84 23.208±15.98 18.745±2.22 17.867±0.81 38.860±20.01 45.177±26.60 20.106±4.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705
CIL_0004TJ CIL_0004TJ_0002 CGP 5:145114215-145140238
CIL_0005LD CIL_0005LD_0003 CGP 5:145128769-145148078

Gene Ontology

GO IDEvidence TypeGO Description
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350498 PDAP1-001 protein_coding Homo_sapiens 0 1317
ENST00000426447 PDAP1-002 nonsense_mediated_decay Homo_sapiens 0 885

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