C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pentatricopeptide repeat domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029624 Ptcd1 10090 - 5:145147514-145167108 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031628 Ptcd1-001 145147514-145167108 protein_coding
  ENSMUST00000161390 Ptcd1-002 145165448-145166956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031628 6.827±1.04 8.816±0.99 7.335±0.73 6.644±0.57 6.109±1.81 6.360±0.72 5.076±1.34 7.139±1.42 5.406±1.73 4.289±1.59 5.229±0.64 10.190±1.40 12.413±4.96 6.954±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LD CIL_0005LD_0003 CGP 5:145128769-145148078
CIL_0004TK CIL_0004TK_0002 CGP 5:145140362-145167108
CIL_0004TL CIL_0004TL_0002 CGP 5:145147514-145182041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0003674 ND molecular_function
GO:0005759 ISS mitochondrial matrix
GO:0008150 ND biological_process
GO:0042780 ISS tRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076176 ptcd1 pentatricopeptide repeat domain 1 protein_coding Danio_rerio
ENSG00000106246 PTCD1 pentatricopeptide repeat domain 1 protein_coding Homo_sapiens
ENSG00000248919 ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough protein_coding Homo_sapiens

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