C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pentatricopeptide repeat domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031628 Ptcd1-001 ENSMUSG00000029624 10090 - 5:145147514-145167108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031628 6.827±1.04 8.816±0.99 7.335±0.73 6.644±0.57 6.109±1.81 6.360±0.72 5.076±1.34 7.139±1.42 5.406±1.73 4.289±1.59 5.229±0.64 10.190±1.40 12.413±4.96 6.954±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LD CIL_0005LD_0003 CGP 5:145128769-145148078
CIL_0004TK CIL_0004TK_0002 CGP 5:145140362-145167108
CIL_0004TL CIL_0004TL_0002 CGP 5:145147514-145182041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0003674 ND molecular_function
GO:0005759 ISS mitochondrial matrix
GO:0008150 ND biological_process
GO:0042780 ISS tRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222969 BUD31-001 protein_coding Homo_sapiens 0.00000000001 75
ENST00000292478 PTCD1-001 protein_coding Homo_sapiens 0 1500
ENST00000403633 BUD31-002 protein_coding Homo_sapiens 0.00000000002 75
ENST00000413834 ATP5J2-PTCD1-001 protein_coding Homo_sapiens 0 1500
ENST00000431419 BUD31-005 protein_coding Homo_sapiens 0.000000000008 75
ENST00000456893 BUD31-003 protein_coding Homo_sapiens 0.000000000007 75
ENST00000485746 PTCD1-005 processed_transcript Homo_sapiens 0 553

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