C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007993 Rbm28-001 ENSMUSG00000029701 10090 - 6:29123573-29165006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007993 2.966±0.49 1.214±0.36 6.173±0.91 5.756±1.01 1.277±0.45 1.628±0.81 1.319±0.57 3.236±0.91 3.250±2.38 4.239±1.16 3.570±0.55 4.209±2.31 5.135±1.15 16.588±18.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HQ CIL_0006HQ_0003 CGP 6:29060220-29165006
CIL_0001OF CIL_0001OF_0002 CGP 6:29123573-29179584

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005681 IEA spliceosomal complex
GO:0005730 IEA nucleolus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223073 RBM28-001 protein_coding Homo_sapiens 0 2089
ENST00000415472 RBM28-002 protein_coding Homo_sapiens 0 1400
ENST00000459726 RBM28-003 protein_coding Homo_sapiens 0 497
ENST00000478061 RBM28-005 protein_coding Homo_sapiens 0 588
ENST00000481788 RBM28-007 processed_transcript Homo_sapiens 0 396
ENST00000487602 RBM28-006 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000495327 RBM28-008 retained_intron Homo_sapiens 0 272

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