C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caldesmon 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029761 Cald1 10090 + 6:34598500-34775473 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031775 Cald1-014 34709634-34773694 protein_coding
  ENSMUST00000079391 Cald1-002 34598500-34775454 protein_coding
  ENSMUST00000115021 Cald1-001 34709442-34775473 protein_coding
  ENSMUST00000115026 Cald1-015 34598565-34775466 protein_coding
  ENSMUST00000115027 Cald1-006 34598564-34775466 protein_coding
  ENSMUST00000123823 Cald1-009 34745952-34755897 protein_coding
  ENSMUST00000126181 Cald1-012 34746007-34755807 protein_coding
  ENSMUST00000127055 Cald1-008 34598620-34662748 retained_intron
  ENSMUST00000132331 Cald1-013 34764956-34766638 retained_intron
  ENSMUST00000136907 Cald1-005 34745981-34755807 protein_coding
  ENSMUST00000142512 Cald1-007 34598512-34753588 protein_coding
  ENSMUST00000142716 Cald1-010 34746386-34762124 protein_coding
  ENSMUST00000146685 Cald1-011 34747773-34753507 retained_intron
  ENSMUST00000149009 Cald1-016 34709490-34775468 nonsense_mediated_decay
  ENSMUST00000154182 Cald1-004 34598544-34742208 retained_intron
  ENSMUST00000155714 Cald1-003 34598544-34687173 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079391ENSMUST00000115021ENSMUST00000115026ENSMUST00000115027ENSMUST00000126181ENSMUST00000136907ENSMUST00000142512ENSMUST00000142716
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079391 N/A N/A N/A N/A 3.167±0.00 4.133±0.00 N/A N/A N/A 3.901±0.00 N/A N/A 15.141±0.00 0.872±0.00
ENSMUST00000115021 33.158±2.18 6.378±1.64 N/A 10.212±0.96 10.269±4.63 6.155±2.15 3.687±1.01 4.184±0.34 33.897±10.24 19.753±1.42 0.953±0.15 10.093±3.66 52.370±32.25 0.616±0.07
ENSMUST00000115026 13.464±0.00 N/A 112.985±29.68 2.983±0.63 12.121±0.00 14.297±1.12 3.702±1.78 10.062±2.20 4.165±0.89 9.569±3.63 3.694±0.95 52.710±15.04 24.708±14.36 1.511±0.22
ENSMUST00000115027 27.432±3.02 N/A 226.917±47.37 1.801±0.00 2.410±0.72 18.036±1.65 2.579±0.37 2.074±0.43 2.890±0.26 3.896±0.00 N/A 10.990±5.35 9.343±4.27 1.099±0.60
ENSMUST00000126181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 272.932±0.00 N/A
ENSMUST00000136907 N/A N/A 258.180±0.00 N/A N/A 33.834±0.00 N/A N/A N/A N/A N/A 46.293±16.06 N/A 10.736±0.00
ENSMUST00000142512 N/A N/A N/A 11.055±0.00 N/A N/A N/A N/A N/A N/A N/A 192.057±0.00 146.549±7.18 20.260±0.00
ENSMUST00000142716 N/A N/A N/A 8.479±0.00 N/A N/A N/A N/A N/A N/A N/A 148.496±0.00 N/A 21.689±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024W CIL_00024W_0003 CGP 6:34476207-34775473
CIL_0002H0 CIL_0002H0_0002 CGP 6:34598500-34859459

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005516 IEA calmodulin binding
GO:0005886 IEA plasma membrane
GO:0006936 IEA muscle contraction
GO:0006940 TAS regulation of smooth muscle contraction
GO:0015629 IEA actin cytoskeleton
GO:0016020 IDA membrane
GO:0017022 IEA myosin binding
GO:0030478 IDA actin cap

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070314 cald1l caldesmon 1 like protein_coding Danio_rerio
ENSDARG00000086391 cald1 caldesmon 1 protein_coding Danio_rerio
ENSG00000122786 CALD1 caldesmon 1 protein_coding Homo_sapiens

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