C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caldesmon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115027 Cald1-006 ENSMUSG00000029761 10090 + 6:34598564-34775466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000115027
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000115027 27.432±3.02 226.917±47.37 1.801±0.00 2.410±0.72 18.036±1.65 2.579±0.37 2.074±0.43 2.890±0.26 3.896±0.00 10.990±5.35 9.343±4.27 1.099±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024W CIL_00024W_0003 CGP 6:34476207-34775473
CIL_0002H0 CIL_0002H0_0002 CGP 6:34598500-34859459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005516 IEA calmodulin binding
GO:0006936 IEA muscle contraction
GO:0006940 TAS regulation of smooth muscle contraction
GO:0016020 IDA membrane
GO:0017022 IEA myosin binding
GO:0030478 IDA actin cap

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361675 CALD1-005 protein_coding Homo_sapiens 0 1363
ENST00000361901 CALD1-001 protein_coding Homo_sapiens 0 1208
ENST00000393118 CALD1-201 protein_coding Homo_sapiens 0 1271
ENST00000417172 CALD1-002 protein_coding Homo_sapiens 0 1177
ENST00000422748 CALD1-003 protein_coding Homo_sapiens 0 1286
ENST00000424922 CALD1-010 protein_coding Homo_sapiens 0 1208
ENST00000430085 CALD1-004 nonsense_mediated_decay Homo_sapiens 0 1208
ENST00000436461 CALD1-012 protein_coding Homo_sapiens 0 856
ENST00000443197 CALD1-009 nonsense_mediated_decay Homo_sapiens 0 1024
ENST00000466704 CALD1-015 processed_transcript Homo_sapiens 0 684
ENST00000472096 CALD1-024 retained_intron Homo_sapiens 0 342
ENST00000473714 CALD1-025 retained_intron Homo_sapiens 0 257
ENST00000478075 CALD1-023 processed_transcript Homo_sapiens 3e-31 137
ENST00000480638 CALD1-028 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000482470 CALD1-008 retained_intron Homo_sapiens 0 904
ENST00000495522 CALD1-029 protein_coding Homo_sapiens 0 1286

Loading